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  3. RAFL09-62-G09

RAFL09-62-G09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09868)

full reading [+] show sequence

Nucleotide sequence: RAFL09-62-G09 - full reading 
GAGGATACCA AATTGAATGC TTTACCAAAC TCACATAACC ATCTCTTCTT 
GACCCTTTTC TTTAATCTTT AATCTCTTTC TTCTTCTTCT TCTTCTTCTT 
CTTCTCGCCA CCGCTCCTTC CTCCCTCCTT CTCTCTGTAT CAGTTTTTTT 
CTCGATAGGA AAATGGAACA AGCCGCGTTG AAGAGCAGCG TCAGGAAAGA 
GATGGCTCTC AAAACGACTT CTCCGGTTTA CGAAGAGTTT CTTGCCGTCA 
CCACCGCTCA AAATGGCTTT TCCGTCGACG ATTTCTCTGT AGACGACTTG 
CTTGACTTGT CAAACGATGA CGTTTTTGCC GACGAAGAAA CTGACCTCAA 
GGCTCAACAT GAGATGGTCC GTGTTTCCTC TGAGGAACCC AACGACGACG 
GAGACGCTCT TCGCCGGAGC AGCGATTTCT CCGGCTGTGA CGACTTTGGT 
TCTCTCCCTA CAAGCGAACT CTCTCTTCCG GCGGATGATT TAGCGAACCT 
TGAGTGGCTC TCTCATTTCG TGGAGGACTC CTTCACGGAA TATTCGGGTC 
CAAACCTCAC CGGAACCCCG ACTGAGAAAC CGGCGTGGTT AACGGGTGAC 
CGGAAACATC CTGTGACTGC AGTCACGGAA GAGACCTGTT TCAAATCCCC 
TGTTCCGGCT AAAGCCCGTA GCAAACGTAA CCGCAATGGC CTCAAGGTCT 
GGTCGCTTGG TTCGTCGTCC TCCTCGGGTC CTTCCTCGTC CGGTTCGACC 
TCCTCCTCCT CTTCGGGTCC TTCCAGCCCG TGGTTCTCCG GCGCTGAGCT 
GCTCGAGCCT GTGGTCACGT CAGAGAGGCC ACCGTTTCCC AAGAAGCATA 
AGAAAAGGTC AGCCGAGTCT GTTTTCTCCG GTGAGCTGCA GCAGCTGCAA 
CCTCAGCGAA AGTGCAGCCA CTGCGGCGTT CAGAAAACTC CGCAGTGGAG 
AGCCGGGCCA ATGGGAGCCA AGACCCTGTG CAATGCGTGC GGTGTCCGGT 
ACAAGTCGGG TAGGTTGCTA CCGGAATACA GACCCGCTTG TAGCCCGACA 
TTCTCGAGTG AGCTGCACTC GAACCACCAC CGGAAAGTCA TAGAGATGAG 
GCGGAAGAAG GAGCCAACCA GTGACAACGA AACCGGTTTA AACCAGCTGG 
TTCAGTCCCC ACAAGCTGTA CCAAGTTTTT GAAGAAATAG GGCCTTAATT 
AGAGCAGAGA TTTAGGATCC GAACCGGTTC AGTTGTTAGC CCCAAGTTAG 
TTTCTCATTG ACTTGTTTCT TTGTATATTA CTTTCATTAT TTTTAGCATT 
TACTTTTTTT TTGTTACAGT AGTTTGATTT TTCATGCTAG GAGTATCCGT 
AAGTTCTTAG TAACTGATTA GGTCAAAAAC TCGTTTGTAT TGTACTCTTT 
CGCGTTAATT TTTTCAGTTT AAATTTCCCC ATTT

Gene models with high sequence identity

  1. AT5G66320.1 [+] show detail - GATA transcription factor 5
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Zinc finger, GATA-type 0
superfamily Glucocorticoid receptor-like (DNA-binding dom 1.7e-18
Gene3D Zinc finger, NHR/GATA-type 0.00012
HMMPIR Transcription factor, GATA, plant 3.8e-210
HMMPanther gb def: Transcriptional regulatory protein GA 8.7e-05
HMMPanther TRANSCRIPTION FACTOR GATA (GATA BINDING FACTO 8.7e-05
HMMPfam Zinc finger, GATA-type 3.6e-16
Coil coiled-coil 0
HMMSmart Zinc finger, GATA-type 1.6e-15
ProfileScan Zinc finger, GATA-type 11.793

See the detailed result >

AT5G66320.1

Model type
Protein coding
Short Description
GATA transcription factor 5
Curator Summary
Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.
Computational Description
GATA transcription factor 5 (GATA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 6 (TAIR:AT3G51080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-62-G09 introduced

  • F25551 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

17 mutant lines found