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  3. RAFL09-62-H09

RAFL09-62-H09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09870)

full reading [+] show sequence

Nucleotide sequence: RAFL09-62-H09 - full reading 
TTACATTTTT CTGTTGAATC CAACTATGTT TAGATTGAGA AGTCTCTTGT 
CGCTGAAGAG TTCTTCGATT GTAGAATTGT CATCACAAAA CGTCACAGAA 
GCAATTCGTT TCGCTCCATT TCATTCGACA AGTGTTCTGT CTGAAAAATC 
GAGGAGTAGA TTTGGTTCTG CTAGAGATTC CGAAGGCGAA CGATCTTCAA 
AGAACTCCTC CATAAGATTT ACATGTACCG TAAAGGAGAA GGGTCGTACC 
AGTGCTAAGA AGACTGTGGA TAAACTCCTT TTCCACAGGG GAATTAATGA 
TCCGCTTCAG AATGAGTGGC ATTTCGGGCC AAGTCCGCTT ATCCGGGATA 
GGCATATGAA GAAAAAATCT CCGCCTGGCA GGGGAAAGAA GCCTCGAGAT 
AAGAAAACAA AACGATGGCA CAGAGAAGGT AATCCGGACG ATGATTTTGG 
CACTGATGCT AATAATACAT TCGAGAACAA ATGGAGAGAA CGCTGGACAG 
CTCAATCTCA GAAGGCTTCA TATTCGAAAG ACTCGACAGC GGGATTTGAA 
TGGAGAGAAG GCTGGAGCTG GACCACTCAA TCTCAGAGGA GCAAAAGTTG 
GAATAAAGAG TCTTTTGATG AACCTTTGAA CGTTGAGTTT AGGTCTGAGA 
GGATTGTTCT AGGATTGCCT CTTGATGGTC CCATCAAGGT TGATGATGTT 
AAGAATGCCT TCCGATCTTC TGCGTTGAAG TGGCATCCAG ATAAGCACCA 
GGGGCCTTCT CAGGTGGCAG CGCAAGAGAA ATTCAAACTC TGTGTTGATG 
CATACAAGTC CCTCTGTTCT GCACTCGCTT GACGTTACAC ATAGGCATTG 
ATGCACCATT TTAGCATTAG TTGATAAGGC TGCTTCTGAA ACGTTTTCGA 
GAGATACACC GGTTTTTAGA TGATGGGTTT GATTTGGTTC ATGAGAATCC 
ACCAGCTACA AGATTGCACA CGGCACACCA ATGTGTCTCT CGTCCTTTTC 
CAACATTTGA TAACAAAAAC ATGTATGTGA AAGATTTATG CTAGTGCCCA

Gene models with high sequence identity

  1. AT2G18465.1 [+] show detail - Chaperone DnaJ-domain superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Heat shock protein DnaJ, N-terminal 0.00000039
HMMPfam Heat shock protein DnaJ, N-terminal 0.0000000033
HMMPanther DNAJ HOMOLOG SUBFAMILY B MEMBER 2, 6, 8, 10 0.0000016
HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 0.0000016
ProfileScan Heat shock protein DnaJ, N-terminal 9.738
Gene3D Heat shock protein DnaJ, N-terminal 0.00093
superfamily Heat shock protein DnaJ, N-terminal 0.0000000016

See the detailed result >

AT2G18465.1

Model type
Protein coding
Short Description
Chaperone DnaJ-domain superfamily protein
Computational Description
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT2G42080.1); Has 909 Blast hits to 907 proteins in 206 species: Archae - 6; Bacteria - 183; Metazoa - 307; Fungi - 24; Plants - 167; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-62-H09 introduced

  • F28341 - rosette leaf::dark green / rosette leaf::abnormal / stem::present in fewer numbers in organism / fruit::abnormal / stem::abnormal / rosette leaf::dark green / rosette leaf::increased width / rosette leaf::abnormal / cauline leaf::decreased size / stem::present in fewer numbers in organism / fruit::abnormal

Mutant lines with disrupted or induced

2 mutant lines found