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  3. RAFL09-63-C20

RAFL09-63-C20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08557)

full reading [+] show sequence

Nucleotide sequence: RAFL09-63-C20 - full reading 
GTCTCTCTCT TCTCCAAAGA TCACTCTCTC CTTTTTGAAT TTCGTCCATT 
GGAGGTGTCA TTTTCCGTTT CTAGATTAGG GTTTCGATCT CAGCTCTCGC 
GAATTGCTAA TCCTTCAGCT GTGGTCTGCG CTTTCTGTCA TAGTTAGATC 
CGGTTTCGCG AATTCGGATC TGCGCCGTGT GAGGCGGTGG AGGACGGTGG 
ATCTGAGGAC TCTGTTCCAC CATGACCGGA ATGAGAGGTC TCTCCGTATT 
TATCAGCGAC GTTCGTAATT GTCAGAACAA GGAAGCGGAG AGACTACGAG 
TTGATAAGGA GCTCGGAAAC ATTCGTACAT GCTTCAAGAA TGAGAAGGTC 
TTAACACCAT ACAAAAAGAA GAAATATGTC TGGAAAATGC TTTATATACA 
TATGCTAGGC TACGATGTGG ATTTTGGCCA TATGGAGGCA GTTTCTCTTA 
TATCTGCGCC AAAGTATCCA GAAAAGCAGG TTGGCTACAT TGTTACATCT 
TGCTTGCTCA ATGAGAACCA TGACTTTTTG AAGTTGGCTA TAAATACAGT 
GCGGAACGAT ATTATTGGTC GGAATGAGAC TTTCCAATGC TTAGCACTGA 
CCTTGGTTGG AAATATTGGT GGAAGAGATT TTGCTGAATC ATTGGCACCT 
GATGTTCAAA AGCTACTTAT TTCTAGTAGT TGCAGACCTC TCGTAAGGAA 
AAAAGCGGCA CTGTGCCTAC TGCGCTTATT CCGAAAAAAT CCGGATGCTG 
TCAACGTTGA TGGCTGGGCG GATCGTATGG CACAACTTTT GGATGAACGA 
GATCTTGGTG TCTTGACGTC TTCTACGAGT CTTCTTGTAG CTCTGGTATC 
TAACAATCAT GAGGCGTACT CAAGTTGTCT ACCTAAATGT GTCAAAATAT 
TAGAACGCCT TGCTAGGAAC CAGGATGTTC CTCAGGAGTA CACATACTAT 
GGCATCCCAT CTCCTTGGCT CCAGGTTAAG GCAATGAGGG CTCTTCAATA 
TTTTCCAACC ATTGAAGATC CCAGTACCAG AAAAGCTCTC TTTGAGGTCC 
TTCAGCGAAT ATTGATGGGC ACAGATGTTG TGAAAAATGT GAATAAAAAC 
AATGCGTCTC ATGCCGTGCT GTTTGAAGCT CTCTCCCTGG TCATGCATCT 
TGATGCTGAG AAGGAAATGA TGTCACAGTG TGTTGCTCTT CTTGGCAAGT 
TTATTTCTGT CCGTGAGCCC AACATCAGAT ATCTAGGCTT GGAAAATATG 
ACGCGAATGC TGATGGTCAC AGATGTTCAA GATATCATAA AGAAGCATCA 
GTCTCAGATA ATCACCTCGT TGAAAGACCC TGACATCAGT ATTCGTAGAC 
GCGCTCTTGA TTTGCTATAT GGGATGTGCG ATGTGTCAAA TGCAAAGGAT 
ATAGTTGAAG AGTTGTTGCA GTATCTTAGC ACAGCGGAAT TTTCTATGCG 
GGAGGAATTA TCACTTAAAG CTGCTATTCT TGCTGAGAAG TTTGCTCCTG 
ATCTTTCATG GTATGTAGAT GTGATCCTTC AGTTGATCGA CAAGGCTGGG 
GATTTTGTTA GCGATGACAT TTGGTTTCGT GTGGTTCAGT TTGTAACAAA 
TAATGAAGAC CTGCAGCCTT ATGCGGCATC AAAAGCAAGA GAATATATGG 
ACAAAATTGC AATCCATGAG ACCATGGTGA AGGTCAGTGC TTATATTTTG 
GGGGAGTATG GTCACCTTTT AGCTAGACAA CCTGGATGCA GTGCAAGTGA 
ACTCTTTAGC ATCTTACATG AGAAGCTTCC TACAGTATCG ACTCCCACCA 
TTCCTATTCT TCTTTCTACA TATGCAAAGC TTCTTATGCA CGCTCAACCC 
CCGGATCCAG AACTGCAAAA AAAAGTTTGG GCTGTATTTA AGAAATATGA 
GAGTTGTATC GATGTGGAGA TACAACAGAG GGCAGTTGAA TATTTTGAAT 
TGAGTAAAAA AGGGCCTGCC TTTATGGATG TATTGGCTGA GATGCCAAAA 
TTTCCGGAGC GCCAGTCTTC ATTGATTAAA AAGGCAGAAA ACGTTGAAGA 
TACCGCAGAC CAGAGTGCCA TCAAACTTAG AGCACAACAA CAGCCTTCAA 
ATGCTATTGT TTTGGCTGAC CCACAGCCTG TTAATGGGGC ACCACCACCT 
TTGAAGGTTC CAATTTTAAG TGGAAGCACG GACCCTGAGT CAGTGGCTCG 
ATCTCTCTCA CATCCCAATG GAACTTTAAG TAATATAGAT CCACAAACTC 
CATCACCTGA TCTCCTTAGT GACCTACTCG GTCCTCTTGC AATAGAGGCT 
CCACCTGGAG CTGTCTCATA TGAACAACAT GGTCCCGTAG GGGCAGAAGG 
AGTTCCAGAT GAAATTGATG GTTCCGCCAT TGTACCTGTT GAAGAGCAAA 
CAAATACAGT GGAGCTTATC GGAAATATTG CTGAGAGATT TCATGCTTTA 
TGTTTGAAAG ACAGTGGTGT CTTATACGAG GATCCTCATA TCCAGATTGG 
CATCAAAGCT GAATGGAGAG GACACCATGG GAGACTTGTT CTCTTCATGG 
GAAACAAGAA TACTTCTCCA CTTACATCAG TTCAAGCTCT GATACTACCC 
CCTGCCCACT TAAGACTGGA TCTGTCTCCA GTACCTGATA CAATTCCTCC 
TCGAGCACAG GTACAATCTC CGCTTGAAGT GATGAACATC CGCCCTAGTA 
GGGATGTTGC AGTTTTGGAT TTCTCCTACA AGTTTGGTAC AAACGTGGTC 
AGTGCCAAAT TACGCATCCC GGCAACCTTG AATAAGTTTC TTCAACCTCT 
ACAATTGACA TCTGAAGAGT TCTTCCCTCA ATGGAGAGCA ATCTCAGGGC 
CACCCTTGAA ACTTCAGGAA GTGGTAAGAG GTGTAAGACC TCTAGCTCTT 
CCGGAAATGG CAAATCTGTT CAACAGTTTT CATGTGACGA TATGCCCTGG 
GCTTGATCCA AACCCTAATA ATCTAGTGGC AAGCACAACC TTCTACTCTG 
AAACTACAGG AGCCATGCTC TGTTTGGCAA GAATTGAAAC AGACCCAGCG 
GACAGAACCC AACTACGATT GACAGTAGGC TCGGGAGATC CTACCCTTAC 
ATTTGAGTTA AAAGAATTCA TCAAGGAACA ATTAATTACT ATTCCAATGG 
GATCTCGAGC TCTAGTTCCA GCAGCAGGTC CAGCACCATC ACCAGCAGTT 
CAACCGCCTA GCCCAGCGGC TTTAGCTGAT GATCCAGGAG CTATGCTTGC 
TGGCTTACTT TAAATTCATT GGGATAAAAG ATTACTTGCA CATGTCGAAA 
AGTTTGTTTT CTGTTATTGT AGAATGTAAT GGCGAAAATA TGGAATGATG 
GGAGAGTAAA TGTAGAGCCA AGGGAGAGAA AAAAGCTAGT TTTGATTATA 
TTTGTGCCGT TTATCCAAAG CGGGCGGGTT GCGTTAGGTA AGAAATTTTG 
CATTCATTCT GAACATTTGT ATTGTGAGGT CAGTGGTTGT ATCAGCTTGT 
TCTTGTGC

Gene models with high sequence identity

  1. AT5G22780.1 [+] show detail - Adaptor protein complex AP-2, alpha subunit
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
HMMPIR Adaptor protein complex AP-2, alpha subunit 0
HMMPanther ADAPTER-RELATED PROTEIN COMPLEX 2 ALPHA 1 SUB 0
HMMPanther ADAPTIN, ALPHA/GAMMA/EPSILON 0
HMMSmart Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain 7.5e-22
superfamily Armadillo-type fold 2.5e-145
superfamily Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain 3.2e-35
superfamily Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain 4.2e-34
Gene3D Armadillo-like helical 6e-118
Gene3D Clathrin adaptor, alpha-adaptin, appendage, Ig-like subdomain 6.8e-36
Gene3D Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain 7.5e-35
HMMPfam Clathrin/coatomer adaptor, adaptin-like, N-terminal 2.1e-113
HMMPfam Clathrin adaptor, alpha-adaptin, appendage, C-terminal subdomain 9.5e-29
HMMPfam Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain 1.6e-18

See the detailed result >

AT5G22780.1

Model type
Protein coding
Short Description
Adaptor protein complex AP-2, alpha subunit
Computational Description
Adaptor protein complex AP-2, alpha subunit; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Adaptor protein complex AP-2, alpha subunit (InterPro:IPR017104), Armadillo-like helical (InterPro:IPR011989), Clathrin adaptor, alpha-adaptin, appendage, Ig-like subdomain (InterPro:IPR013038), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, alpha-adaptin, appendage, C-terminal subdomain (InterPro:IPR003164), Armadillo-type fold (InterPro:IPR016024), Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain (InterPro:IPR015873), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: alpha-adaptin (TAIR:AT5G22770.2); Has 2538 Blast hits to 2472 proteins in 298 species: Archae - 0; Bacteria - 2; Metazoa - 993; Fungi - 688; Plants - 265; Viruses - 0; Other Eukaryotes - 590 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-63-C20 introduced

  • F14333 - rosette leaf::dark green / rosette leaf::dark green / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::decreased thickness / stem::present in fewer numbers in organism
  • F19918 - Specific phenotypes were NOT observed.
  • F20950 - Specific phenotypes were NOT observed.
  • F25427 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found