1. Home
  2. Full-length cDNAs
  3. RAFL09-63-L08

RAFL09-63-L08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08572)

full reading [+] show sequence

Nucleotide sequence: RAFL09-63-L08 - full reading
CTCTCCGCCT GTTCTCCATT GATCTAATCT AACTCGCTCA TCAGAATCAT 
CTCTTCATCG TTAATCCTCT TCCTTCTCAC TCACCATGTA TCGTTTCGCT
TCTAACCTCG CCTCCAAGGC AAGGATTGCT CAAAACGCTC GCCAGGTTTC
CAGCAGAATG AGCTGGAGCA GGAACTATGC AGCGAAAGAG ATTAAGTTTG
GTGTTGAAGC TCGAGCTTTG ATGCTTAAGG GTGTTGAAGA TCTTGCTGAT
GCTGTTAAAG TCACCATGGG TCCCAAGGGA CGTAATGTTG TGATTGAGCA
AAGTTGGGGT GCTCCTAAAG TGACAAAAGA TGGTGTTACT GTTGCCAAAA
GTATTGAGTT CAAAGACAAA ATTAAGAACG TTGGTGCTAG TCTTGTGAAG
CAGGTTGCAA ATGCTACTAA TGATGTTGCT GGTGATGGTA CTACTTGTGC
TACTGTCCTC ACCCGGGCTA TATTTGCCGA AGGATGCAAA TCAGTTGCCG
CAGGAATGAA TGCAATGGAC TTGCGAAGAG GTATTTCCAT GGCAGTTGAT
GCTGTGGTGA CAAACCTTAA AAGCAAGGCT AGGATGATCA GCACATCTGA
AGAGATTGCT CAGGTTGGAA CCATTTCTGC TAATGGAGAG AGGGAAATTG
GTGAACTTAT TGCCAAGGCT ATGGAGAAGG TTGGCAAAGA AGGTGTTATC
ACAATCCAAG ATGGAAAGAC ATTGTTTAAC GAGTTGGAAG TTGTAGAGGG
GATGAAATTG GACAGAGGTT ATACTTCACC ATACTTTATC ACTAATCAAA
AAACCCAAAA ATGTGAACTA GACGATCCTC TCATTCTTAT CCACGAGAAG
AAGATCTCAA GCATCAACTC TATAGTGAAA GTGTTGGAGT TGGCTCTGAA
GAGGCAAAGA CCACTATTGA TTGTTTCTGA AGATGTGGAA AGTGATGCTC
TTGCAACTCT TATCCTTAAC AAGCTCCGTG CCGGAATTAA GGTCTGTGCC
ATCAAGGCCC CTGGGTTTGG AGAGAATAGG AAGGCCAATT TGCAAGACCT
TGCTGCCCTT ACTGGTGGAG AGGTTATCAC AGACGAGCTT GGCATGAATC
TGGAGAAGGT GGACCTAAGC ATGCTAGGAA CCTGCAAAAA GGTTACAGTC
TCCAAGGACG ACACTGTTAT TCTTGATGGG GCTGGCGACA AGAAAGGAAT
TGAGGAAAGA TGTGAACAGA TTAGGTCAGC AATTGAACTG AGCACCTCAG
ATTATGACAA GGAAAAACTG CAAGAAAGGT TGGCTAAGCT CTCTGGAGGT
GTTGCAGTGT TGAAGATTGG AGGAGCAAGT GAAGCTGAAG TTGGTGAGAA
GAAAGACAGA GTGACAGATG CTTTGAATGC CACTAAAGCA GCAGTTGAAG
AGGGTATTTT ACCAGGAGGA GGTGTGGCTC TTCTATACGC AGCAAGAGAG
TTGGAAAAAC TTCCAACAGC CAACTTTGAC CAGAAGATTG GTGTCCAGAT
TATTCAGAAC GCATTGAAGA CTCCTGTTTA CACAATCGCT TCAAATGCTG
GAGTTGAAGG TGCTGTTATT GTTGGCAAGC TCTTGGAGCA AGATAACCCA
GACCTCGGTT ATGATGCTGC TAAAGGTGAA TATGTGGATA TGGTGAAAGC
TGGAATCATA GACCCTCTGA AAGTGATCAG GACAGCTTTG GTTGATGCTG
CGAGTGTGTC ATCTTTGTTG ACGACAACGG AAGCTGTAGT GGTTGATCTT
CCGAAAGACG AAAGCGAGTC AGGAGCAGCA GGAGCAGGCA TGGGTGGAAT
GGGAGGCATG GACTACTAGA TCCACTAAAT TCTGTCTTTT GTTTTCACCA
ATCACCATCT TAACTTGAGA AGAGAGATAC GATTCTTTTA GGAGTTTTAG
TCTTCGTCTT TGCCTTATTG TTGCTCAATA ACCTCAAAAG TTTTACAATA
AACAGAGCAC ACTTGGCAAT GTTACGAGAC ACACTATTAG CATT

Gene models with high sequence identity

  1. AT3G23990.1 [+] show detail - heat shock protein 60
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Chaperonin Cpn60, conserved site 0
HMMTigr Chaperonin Cpn60 0
HAMAP Chaperonin Cpn60 37.917
Gene3D no description 3.4e-83
Gene3D no description 6e-36
FPrintScan Chaperonin Cpn60 6.4e-71
FPrintScan Chaperonin Cpn60 6.4e-71
FPrintScan Chaperonin Cpn60 6.4e-71
FPrintScan Chaperonin Cpn60 6.4e-71
FPrintScan Chaperonin Cpn60 6.4e-71
superfamily Chaperonin Cpn60/TCP-1 1e-73
superfamily GroEL apical domain-like 1.6e-62
superfamily GroEL-intermediate domain like 1.3e-19
HMMPfam Chaperonin Cpn60/TCP-1 1e-117
HMMPanther CHAPERONIN-60KDA, CH60 0
HMMPanther Chaperonin Cpn60/TCP-1 0

See the detailed result >

AT3G23990.1

Model type
Protein coding
Short Description
heat shock protein 60
Curator Summary
mitochondrial chaperonin HSP. assist in rapid assembly of the oligomeric protein structures in the mitochondria.
Computational Description
heat shock protein 60 (HSP60); FUNCTIONS IN: copper ion binding, ATP binding; INVOLVED IN: response to cadmium ion, response to cyclopentenone, chaperone-mediated protein complex assembly, response to heat, mitochondrion organization; LOCATED IN: cytosol, cytosolic ribosome, mitochondrion, plasma membrane, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: heat shock protein 60-2 (TAIR:AT2G33210.1); Has 33706 Blast hits to 33652 proteins in 8680 species: Archae - 676; Bacteria - 21745; Metazoa - 1618; Fungi - 1515; Plants - 790; Viruses - 2; Other Eukaryotes - 7360 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-63-L08 introduced

  • F18218 - rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::decreased size / stem::abnormal / cauline leaf::dark green / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

5 mutant lines found