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  3. RAFL09-63-L08

RAFL09-63-L08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08572)

full reading [+] show sequence

Nucleotide sequence: RAFL09-63-L08 - full reading 
CTCTCCGCCT GTTCTCCATT GATCTAATCT AACTCGCTCA TCAGAATCAT 
CTCTTCATCG TTAATCCTCT TCCTTCTCAC TCACCATGTA TCGTTTCGCT 
TCTAACCTCG CCTCCAAGGC AAGGATTGCT CAAAACGCTC GCCAGGTTTC 
CAGCAGAATG AGCTGGAGCA GGAACTATGC AGCGAAAGAG ATTAAGTTTG 
GTGTTGAAGC TCGAGCTTTG ATGCTTAAGG GTGTTGAAGA TCTTGCTGAT 
GCTGTTAAAG TCACCATGGG TCCCAAGGGA CGTAATGTTG TGATTGAGCA 
AAGTTGGGGT GCTCCTAAAG TGACAAAAGA TGGTGTTACT GTTGCCAAAA 
GTATTGAGTT CAAAGACAAA ATTAAGAACG TTGGTGCTAG TCTTGTGAAG 
CAGGTTGCAA ATGCTACTAA TGATGTTGCT GGTGATGGTA CTACTTGTGC 
TACTGTCCTC ACCCGGGCTA TATTTGCCGA AGGATGCAAA TCAGTTGCCG 
CAGGAATGAA TGCAATGGAC TTGCGAAGAG GTATTTCCAT GGCAGTTGAT 
GCTGTGGTGA CAAACCTTAA AAGCAAGGCT AGGATGATCA GCACATCTGA 
AGAGATTGCT CAGGTTGGAA CCATTTCTGC TAATGGAGAG AGGGAAATTG 
GTGAACTTAT TGCCAAGGCT ATGGAGAAGG TTGGCAAAGA AGGTGTTATC 
ACAATCCAAG ATGGAAAGAC ATTGTTTAAC GAGTTGGAAG TTGTAGAGGG 
GATGAAATTG GACAGAGGTT ATACTTCACC ATACTTTATC ACTAATCAAA 
AAACCCAAAA ATGTGAACTA GACGATCCTC TCATTCTTAT CCACGAGAAG 
AAGATCTCAA GCATCAACTC TATAGTGAAA GTGTTGGAGT TGGCTCTGAA 
GAGGCAAAGA CCACTATTGA TTGTTTCTGA AGATGTGGAA AGTGATGCTC 
TTGCAACTCT TATCCTTAAC AAGCTCCGTG CCGGAATTAA GGTCTGTGCC 
ATCAAGGCCC CTGGGTTTGG AGAGAATAGG AAGGCCAATT TGCAAGACCT 
TGCTGCCCTT ACTGGTGGAG AGGTTATCAC AGACGAGCTT GGCATGAATC 
TGGAGAAGGT GGACCTAAGC ATGCTAGGAA CCTGCAAAAA GGTTACAGTC 
TCCAAGGACG ACACTGTTAT TCTTGATGGG GCTGGCGACA AGAAAGGAAT 
TGAGGAAAGA TGTGAACAGA TTAGGTCAGC AATTGAACTG AGCACCTCAG 
ATTATGACAA GGAAAAACTG CAAGAAAGGT TGGCTAAGCT CTCTGGAGGT 
GTTGCAGTGT TGAAGATTGG AGGAGCAAGT GAAGCTGAAG TTGGTGAGAA 
GAAAGACAGA GTGACAGATG CTTTGAATGC CACTAAAGCA GCAGTTGAAG 
AGGGTATTTT ACCAGGAGGA GGTGTGGCTC TTCTATACGC AGCAAGAGAG 
TTGGAAAAAC TTCCAACAGC CAACTTTGAC CAGAAGATTG GTGTCCAGAT 
TATTCAGAAC GCATTGAAGA CTCCTGTTTA CACAATCGCT TCAAATGCTG 
GAGTTGAAGG TGCTGTTATT GTTGGCAAGC TCTTGGAGCA AGATAACCCA 
GACCTCGGTT ATGATGCTGC TAAAGGTGAA TATGTGGATA TGGTGAAAGC 
TGGAATCATA GACCCTCTGA AAGTGATCAG GACAGCTTTG GTTGATGCTG 
CGAGTGTGTC ATCTTTGTTG ACGACAACGG AAGCTGTAGT GGTTGATCTT 
CCGAAAGACG AAAGCGAGTC AGGAGCAGCA GGAGCAGGCA TGGGTGGAAT 
GGGAGGCATG GACTACTAGA TCCACTAAAT TCTGTCTTTT GTTTTCACCA 
ATCACCATCT TAACTTGAGA AGAGAGATAC GATTCTTTTA GGAGTTTTAG 
TCTTCGTCTT TGCCTTATTG TTGCTCAATA ACCTCAAAAG TTTTACAATA 
AACAGAGCAC ACTTGGCAAT GTTACGAGAC ACACTATTAG CATT

Gene models with high sequence identity

  1. AT3G23990.1 [+] show detail - heat shock protein 60
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Chaperonin Cpn60, conserved site 0
HMMTigr Chaperonin Cpn60 0
HAMAP Chaperonin Cpn60 37.917
Gene3D no description 3.4e-83
Gene3D no description 6e-36
FPrintScan Chaperonin Cpn60 6.4e-71
FPrintScan Chaperonin Cpn60 6.4e-71
FPrintScan Chaperonin Cpn60 6.4e-71
FPrintScan Chaperonin Cpn60 6.4e-71
FPrintScan Chaperonin Cpn60 6.4e-71
superfamily Chaperonin Cpn60/TCP-1 1e-73
superfamily GroEL apical domain-like 1.6e-62
superfamily GroEL-intermediate domain like 1.3e-19
HMMPfam Chaperonin Cpn60/TCP-1 1e-117
HMMPanther CHAPERONIN-60KDA, CH60 0
HMMPanther Chaperonin Cpn60/TCP-1 0

See the detailed result >

AT3G23990.1

Model type
Protein coding
Short Description
heat shock protein 60
Curator Summary
mitochondrial chaperonin HSP. assist in rapid assembly of the oligomeric protein structures in the mitochondria.
Computational Description
heat shock protein 60 (HSP60); FUNCTIONS IN: copper ion binding, ATP binding; INVOLVED IN: response to cadmium ion, response to cyclopentenone, chaperone-mediated protein complex assembly, response to heat, mitochondrion organization; LOCATED IN: cytosol, cytosolic ribosome, mitochondrion, plasma membrane, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: heat shock protein 60-2 (TAIR:AT2G33210.1); Has 33706 Blast hits to 33652 proteins in 8680 species: Archae - 676; Bacteria - 21745; Metazoa - 1618; Fungi - 1515; Plants - 790; Viruses - 2; Other Eukaryotes - 7360 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-63-L08 introduced

  • F18218 - rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::decreased size / stem::abnormal / cauline leaf::dark green / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

5 mutant lines found