1. Home
  2. Full-length cDNAs
  3. RAFL09-63-N13

RAFL09-63-N13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz88265)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL09-63-N13 - 5 prime EST 
GATCTTCGTT GTCTCCGTTT AACGAACNTG GCGAATAACA AAGAGAGGAT 
GAATTGTTCA ATCGGAAACT GGAAACACAC TGTTCTCTAC TTAACCCTAA 
TCGTATCTCT TCTCTACTTC ATCGAATCCC TAATCTCACA CAAATTACAC 
ATCAACTACA ACAAAATCCG CCTGAAAAGA TCTCCGAATC TTCCTCTACG 
ATTCCGTGAC GATGGCACAT TCAAAATCCT CCAGGTCGCG GATATGCATT 
TCGGAATGGG GATGATTACT CGATGTAGAG ATGTGTTGGA TTCAGAATTC 
GAATATTGTT CTGATCTCAA CACTACTCGG NTTCTTCGTA GGATGATTGA 
ATCTGAGAGA CCTGATTTGA TTGCTTTCAC TGGGGATANT ATATTTGGAT 
CAAGT

Gene models with high sequence identity

  1. AT5G57140.1 [+] show detail - purple acid phosphatase 28
    E-value: 0; Score: 99.26

3 prime EST [+] show sequence

Nucleotide sequence: RAFL09-63-N13 - 3 prime EST 
GGTGTGGCCA TAATTTATTT ATTTTACTGG TAAACAAGGG GTACATTTAT 
TGTGGACAGT AGAGAAAAGG TGAAAGAAGA AAGGCTTCGT GATGGGCAAA 
CAAACGTAGG AGATCATAAA AATGAAAAGA GAGACATACA TTATTGTGAA 
GAGAGAAGCC AAAATGAACC AAAAAAGGAA GAAAAAAAGT ATTATTAGTA 
AAGAGAGTCG ATGCTCAAAG TAGGGGTTTG AGTTTCATTA TAAGCTCCTA 
TTCCTGTTTC TATTTTTAAA CGGAACACCT CTTGTTCTTC TTCATCCGCC 
TCAATAAAGA AAGTGTGGAA GATTATGCCA GAGAAAGAGG TGAGATTGGA 
AGTGAGGATT TTGAGATTCA ATGAATCAAA GAATTCAAAC AGTTTCACCA 
TTGTATTTGT CCTCTTATTA CATGTTACAC TCAC

Gene models with high sequence identity

  1. AT5G57150.1 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    E-value: 0; Score: 97.00

AT5G57140.1

Model type
Protein coding
Short Description
purple acid phosphatase 28
Computational Description
purple acid phosphatase 28 (PAP28); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Phosphoesterase At2g46880 (InterPro:IPR011230); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 29 (TAIR:AT5G63140.1); Has 678 Blast hits to 661 proteins in 227 species: Archae - 0; Bacteria - 324; Metazoa - 0; Fungi - 205; Plants - 115; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57150.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-63-N13 introduced

  • F17409 - seed::increased size / seed::increased length
  • F23513 - Specific phenotypes were NOT observed.
  • F27003 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found

6 mutant lines found