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RAFL09-64-J10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08596)

full reading [+] show sequence

Nucleotide sequence: RAFL09-64-J10 - full reading 
AACCCTCAAA ATCACAATCT TCTCTTACAA AAAACTTTGA AAGATGAAGA 
TTCTTCTAGC ATCATTGTGT TTGATCAGTC TTCTCGTAAT CTTGCCTTCT 
GTCTTCTCTG CTTCTTCTTC CTCTGAAGAT TTTGATTTCT TCTACTTCGT 
CCAACAATGG CCAGGATCAT ACTGTGACAC ACAGAAGAAG TGTTGTTATC 
CAAATTCAGG CAAACCAGCT GCTGATTTTG GCATTCATGG TCTTTGGCCT 
AACTACAAAG ATGGAACTTA TCCATCTAAC TGTGATGCCT CTAAACCATT 
CGATAGCTCA ACGATATCAG ATCTTCTCAC TTCAATGAAG AAGAGCTGGC 
CAACACTGGC TTGCCCAAGC GGTTCAGGTG AAGCGTTTTG GGAGCACGAA 
TGGGAGAAGC ATGGTACTTG CTCTGAATCG GTTATCGATC AACATGAATA 
TTTCCAAACC GCTCTTAACC TTAAACAGAA AACCAATCTC CTTGGAGCTC 
TAACCAAAGC CGGGATTAAT CCGGATGGAA AATCTTACTC TTTGGAGAGC 
ATAAGAGATT CGATAAAAGA GTCAATTGGT TTCACTCCTT GGGTTGAGTG 
TAACAGAGAT GGTTCTGGTA ATAGCCAATT GTACCAAGTC TATCTTTGTG 
TTGACCGGTC TGGTTCCGGT TTAATCGAAT GTCCGGTTTT CCCACATGGG 
AAATGTGGAG CTGAGATCGA ATTCCCTTCT TTTTAGTTTC CAATTTCTAA 
ATTCAGTCTC TTGAACCGGC ATCGATCTTT TGTTCATGGA GATTGGTTTG 
GTCAAAAAGA AGATTTAATG TAATAAAAAT TTATGGGATA TTGGATAATG 
ATATAGTTCA ATTTCAATAA TATTCTACGT T

Gene models with high sequence identity

  1. AT2G02990.1 [+] show detail - ribonuclease 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Ribonuclease T2 8.7e-65
HMMPanther RIBONUCLEASE T2 1.2e-91
HMMPanther Ribonuclease T2 1.2e-91
Coil coiled-coil 0
superfamily Ribonuclease T2 5.2e-76
PatternScan Ribonuclease T2, active site 0
PatternScan Ribonuclease T2, active site 0
HMMPfam Ribonuclease T2 1.2e-60

See the detailed result >

AT2G02990.1

Model type
Protein coding
Short Description
ribonuclease 1
Curator Summary
member of the ribonuclease T2 family, responds to inorganic phosphate starvation, and inhibits production of anthocyanin. Also involved in wound-induced signaling independent of jasmonic acid.
Computational Description
ribonuclease 1 (RNS1); FUNCTIONS IN: ribonuclease activity, endoribonuclease activity; INVOLVED IN: cellular response to phosphate starvation, aging, response to wounding, anthocyanin biosynthetic process; LOCATED IN: extracellular region, cell wall, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: Ribonuclease T2 family protein (TAIR:AT1G14220.1); Has 2632 Blast hits to 2631 proteins in 514 species: Archae - 0; Bacteria - 441; Metazoa - 304; Fungi - 244; Plants - 1533; Viruses - 7; Other Eukaryotes - 103 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-64-J10 introduced

  • F10201 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found