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  3. RAFL09-64-K23

RAFL09-64-K23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08599)

full reading [+] show sequence

Nucleotide sequence: RAFL09-64-K23 - full reading 
GAATCGTTAT CTTTCTCTTC TTTCCTTAAA CCAAAACCCA AAAAAGAGAG 
ACCAGACAAA AAAAAAAAAA ACTCCCCAAC AAAAAAAAGA TATCTGTCTC 
TACTAAAAGT CTCTCTATAG CGATGTCATC GGACAACGAA TCGACACCGT 
CTCAAGCGAC GGTAGAAATG ATGGCGACTT CGCCGGCGAA GATTAAAGAG 
TATCCAGAAC CATTGGCTTT ACATGAAGTT GTCGTCAAGG ATTCTTCTGT 
CTTCTGGGAT ACTCTCAGGC GGTTTCACTC AATTATGTCC ACTAAGTTCA 
TGATTCCTGT GATTGGAGGA AAAGAACTAG ATTTGCATGT TTTGTATGTG 
GAAGTCACGA GGAGGGGAGG TTACGAAAAG GTAGTCGTAG AGAAAAAATG 
GAGGGAAGTT GGAGGAGTGT TTAGATTCTC TGCGACAACA ACAAGTGCTT 
CGTTTGTCTT AAGGAAACAT TATCTCAATC TTCTCTTCCA TTACGAACAA 
GTTCATCTCT TCACTGCTCG TGGTCCTCTT CTTCATCCCA TAGCTACATT 
TCATGCAAAT CCCTCAACGA GCAAAGAAAT GGCGCTCGTC GAATATACTC 
CTCCGAGTAT AAGATATCAT AATACTCATC CTCCTTCTCA AGGTTCGTCG 
AGTTTCACAG CCATAGGTAC AATAGAAGGC AAATTCGATT GTGGTTATCT 
GGTAAAAGTT AAGTTGGGCT CAGAGATTCT TAACGGCGTT CTTTATCATT 
CGGCCCAGCC CGGCCCATCA TCATCTCCAA CCGCTGTTCT AAACAATGCC 
GTTGTACCTT ATGTTGAAAC TGGGAGGAGA CGGCGTCGTT TAGGTAAAAG 
ACGAAGAAGC AGACGCAGAG AAGATCCGAA TTACCCGAAA CCGAACCGGA 
GCGGTTACAA TTTCTTCTTT GCTGAGAAAC ATTGCAAGCT CAAATCACTT 
TATCCCAACA AGGAGAGAGA GTTTACGAAA CTTATCGGAG AATCGTGGAG 
CAATCTCTCT ACCGAAGAAC GAATGGTTTA TCAAGACATT GGATTGAAGG 
ATAAGGAAAG GTATCAGAGG GAGTTGAATG AGTACAGAGA AACGTTGAGA 
CTTAGGGATG GTGACATGAC AAACGGCAAG GCTTTTTAGG TGATTTAGTT 
AAAACGGCAA GTCGTTTTGT TGTAGGTCGT TTCTCTCTTT TAAGATTGGA 
CGCCTCGCCG TTTCTTTTAT TTTCTAGCTT ATTGTAGTTG TCCATGCTTG 
CTTAACTAGG CTCAGTGAGA GGCTAGACTT GCCAAACTTG AAGAGTCTTT 
ATTTATTTAA GAATTTTAGA TGTTCTAATG TATTAATCCT TTTTCGTAAA 
CCTTTCCTGT TAAACAAGAG GTTTATGTTG CATG

Gene models with high sequence identity

  1. AT1G76110.1 [+] show detail - HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
    E-value: 0; Score: 99.93

 

InterPro Scan Digest

Program Description E-value
HMMPfam ARID/BRIGHT DNA-binding domain 9.6e-19
HMMPfam High mobility group, HMG1/HMG2 1.2e-10
HMMSmart ARID/BRIGHT DNA-binding domain 4.2e-38
HMMSmart High mobility group, HMG1/HMG2 1.8e-12
superfamily ARID/BRIGHT DNA-binding domain 6.3e-27
superfamily High mobility group, superfamily 1.2e-19
Gene3D ARID/BRIGHT DNA-binding domain 3.8e-25
Gene3D High mobility group, HMG1/HMG2 3.1e-16
ProfileScan High mobility group, HMG1/HMG2 14.018
ProfileScan ARID/BRIGHT DNA-binding domain 25.699
HMMPanther SWI/SNF-RELATED CHROMATIN BINDING PROTEIN 1.1e-19

See the detailed result >

AT1G76110.1

Model type
Protein coding
Short Description
HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
Computational Description
HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (TAIR:AT1G04880.1); Has 3338 Blast hits to 2805 proteins in 278 species: Archae - 0; Bacteria - 0; Metazoa - 2430; Fungi - 276; Plants - 321; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-64-K23 introduced

  • F02206 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found