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  3. RAFL09-65-A14

RAFL09-65-A14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08606)

full reading [+] show sequence

Nucleotide sequence: RAFL09-65-A14 - full reading 
ATGTTGTGTC ATTCTCTTTT CTTCAAGTCG GCAAAAGTAT CACAATGTTA 
AACATCTTAC CGTTTTTCTT GTTCTTTCTT CCGTTTCTCA TCGGAAACAA 
CCGCATTTGC GTCGCCGTAA AGACAGGCTT TGTCGGGAGA AACGGCACGC 
AGTTCGTGTT GAACGGAGAA CAAGTTTACT TAAACGGCTT CAATGCTTAT 
TGGATGATGA CCACCGCGGC TGACACGGCA TCTAAAGGAA GAGCTACCGT 
CACGACGGCG CTCCGGCAAG CCTCCGCGGT GGGAATGAAC GTCGCTAGGA 
TTTGGGGTTT CAACGAAGGA GATTACATTC CTCTTCAGAT CTCTCCTGGC 
TCCTATAGTG AAGACGTTTT CAAGGGGCTA GACTTTGTCG TCTATGAAGC 
TGGACGATTT AATATTAAAT TGATAATTAG TTTAGTCAAT AATTTCGAAG 
ACTATGGAGG GAGAAAAAAG TACGTGGAAT GGGCCGGTTT AGATGAACCG 
GATGAATTCT ACACAAACTC AGCTGTCAAG CAATTCTACA AGAATCACGT 
GAAGACCGTG TTGACGAGGA AAAACACAAT CACTGGTCGA ATGTACAAAG 
ATGACCCTAC CATCTTCTCA TGGGAACTCA TCAACGAACC TCGCTGCAAT 
GATTCCACTG CTTCGAATAT TCTTCAGGAT TGGGTGAAGG AAATGGCTAG 
TTATGTTAAG TCCATAGACT CAAACCATTT GCTGGAAATA GGGCTTGAAG 
GGTTCTACGG AGAATCTATA CCGGAAAGAA CGGTTTACAA TCCCGGCGGA 
AGGGTCTTAA CCGGTACAGA TTTCATCACC AATAACCAAA TTCCGGATAT 
CGATTTCGCC ACTATCCATA TCTACCCGGA TTCTTGGCTA CCATTACAGA 
GCTCAAGAAC AGGAGAACAA GATACATTTG TGGACAGATG GATCGGAGCA 
CATATTGAAG ACTGTGACAA TATCATCAAG AAGCCTTTGC TGATAACAGA 
GTTTGGGAAA TCTTCAAAGT ACCCTGGTTT TAGCTTAGAG AAACGGAACA 
AGTTTTTCCA AAGAGTTTAC GATGTTATCT ACGACAGTGC AAGGGCTGGT 
GGTTCGTGTA CTGGTGGTGT TTTCTGGCAG CTTACGACCA ATAGAACTGG 
TCTGTTAGGT GATGGGTACG AGGTCTTTAT GCAAGCAGGT CCTAATACTA 
CTGCTCAGCT TATCGCCGAC CAATCTAGTA AACTGAAAAA CCTCAAGTAT 
CCACCGTTGG TCACACATAG TGCAGAATGA AACAGTATAG ATACAAACAG 
TAGATATTAG AATGTAAAAA TAGGAAACAT GTATAGTTGA ATATGAACAA 
AAGCTAAATG ATATGTAGAA TAGTTGAATG T

Gene models with high sequence identity

  1. AT1G02310.1 [+] show detail - Glycosyl hydrolase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Glycoside hydrolase, catalytic core 3.1e-90
Gene3D Glycoside hydrolase, subgroup, catalytic core 6.5e-129
HMMPfam Glycoside hydrolase, family 5 7.4e-14

See the detailed result >

AT1G02310.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT5G66460.1); Has 762 Blast hits to 752 proteins in 193 species: Archae - 9; Bacteria - 223; Metazoa - 4; Fungi - 190; Plants - 306; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-65-A14 introduced

  • F17710 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

5 mutant lines found