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RAFL09-65-H05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08617)

full reading [+] show sequence

Nucleotide sequence: RAFL09-65-H05 - full reading 
ACTACTGTCA TTTAGCCTGC AAAGCCCACA AACAAAGGGC TACACAAGTC 
TTCCTTCTCT CTCTCCCTCT TCCTCTCTTT AGATGGAATA ATGGATCAAT 
GCTTGTAAAG GTTTGAAATT TGATCAAGTT TTGAAGAAGC AAATTGAAAA 
AGAAAAGAAA AGAGAAGACA TGGAGGTGGA GAAGAGGATT GTAGTGAATG 
GAGGAATGAA ATTGCCAATA GGATACAGAT TTCACCCAAC CGAGCAAGAG 
CTTATCCTTC ATTACTTGCT CCCAAAGGCC TTTGCTTCTC CTTTGCCTTC 
CTCCATCATC CCTGTCTTTG ACCTCTTCTT CTCTCATCCT CTTAGTTTCC 
CAGGGGACCA AAAGGAGAAG CAGAGGTACT TCTTTTGCAA GAAGAGAGAA 
GTGTCAAGTA ATGAGCATAG AATCAAGATT TCCTCTGGTG ATGGTTATTG 
GAAACCTATT GGTAAAGAGA GACCAATCAT TGCCTGTGGT AAAACATTTG 
GGATTAGAAG AACACTTGCT TTCTATGAAA CAAACAAGTC TTCTTCTTAT 
TGCAACAAAA CTAGATGGAG CATGACAGAG TATTGTCTTG CGGGATTTGC 
GTCGGCTAAG GTGTCTGGAG AATGGGCAGT GTACAATGTT TATGAGAGGA 
AAGGCTCAAA AGGAAGAAAA CAGAGGAAAT CAAGAGAGGG AGATGATGAA 
GAATTGAGAT GCATCGACCA TTTTACGGTT GGGTCAAATC ATGAAACCGG 
TCCACCACCG CCTTCTCCTC CTACCTCAGC TGATGAGTAA TATATATATC 
TCATAGGAGA CGTTGAGATT GTGACAAGCT CCTAAACCCT AACCTACTAT 
TCCACTTACG TTTCTGTCAA GCTATTTAAA AAATTTCAAC GTCTTGATTT 
ATTTGTTAGC GAAGTAAGTA AAGTAACATG GTTCTAGGGG AGCTCATTTT 
GATCTGAAAC TGTTGAATTG TATGAGTTGA GATTTGCACT TTTGTTGGGC 
AAAACCAAAT ATATGTCAAA CTTGTTGATT ATTTTTACTT GAAGGTATTT 
TAAACT

Gene models with high sequence identity

  1. AT5G14000.1 [+] show detail - NAC domain containing protein 84
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily No apical meristem (NAM) protein 1.9e-41
HMMPfam No apical meristem (NAM) protein 2.4e-30
ProfileScan No apical meristem (NAM) protein 36.989

See the detailed result >

AT5G14000.1

Model type
Protein coding
Short Description
NAC domain containing protein 84
Computational Description
NAC domain containing protein 84 (NAC084); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 83 (TAIR:AT5G13180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-65-H05 introduced

  • F14002 - seed::increased size
  • F15614 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found