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  3. RAFL09-65-I16

RAFL09-65-I16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08620)

full reading [+] show sequence

Nucleotide sequence: RAFL09-65-I16 - full reading 
AGAAGCCTAA AACCTTCACC ACCAAATCGG TGCCTCCTTG AATAGTCGCC 
GCCGTCGTCT ATCATCGCCG CTTGTGACTC CGATGAGAAG CTAGGTTATT 
GAATCAGAGA TTATGGCTGC TTCAATTTCA AGAAGGATTT TTCGCACTTT 
TGGATCCTTT TCAGCTCTAG GACGTTCCTC TTCACCAAAT TTGTCTGCGA 
ATACATCTGG AAATGGTTTA GCTTCTCTTA CTAATGATCT AAAGTATGGA 
ATGGCTTTAC TTTCCAACCG AAAGCTCTCC ACTTCTATTT TGACTCCTGA 
TGATTCATTT CCTTCTGATT TACTTACCAA AAAGACTGTG CTTACACCAG 
ACCGAACCAT AGGACAATAT CAAGACTTGG TCATTCCAGT GACTAATTTT 
CAGAACGAGG AAAAGGGTTT CATGGTTTTA GCAGGTGATG TCTTTGATGT 
TCCAATAAGG AAAGATATCA TTCACAATGT CGTGCGATGG CAGCTTGCGA 
AACGCCAGCA GGGAACTCAT TCGACCAAAA CGTTAAGTGA GGTTAGTGGA 
ACTGGTAGAA AGCCATGGAA TCAGAAGGGT ACAGGTCGAG CTAGACATGG 
TACACTACGT GGTCCGCAGT TCCGAGGTGG TTGTGTAATG CATGGACCCA 
AACCAAGAAG CCATGCCATA AAAATGAATA AGCAGGTTCG ACGGCTTGGA 
CTGAAAATAG CATTGACAGC TCGAGCCGCA GAAGGAAAAC TCCTCGTGTT 
TGATGATTTG GGATTGCCTA CGCATAAAAC AAAGAACATT GTGAACTATT 
ACAACCAAAT GGAGAACACA AAGAAAGTCC TTGTTGTAGA AGGTGGTCCT 
ATTGATGAAA AGCTGAAGCT AGCCACCCAA AATCTACACT ATGTCAACAT 
AATTCCATCA ATAGGGCTAA ATGTTTACAG CATTCTGCTA CACGATACGC 
TTCTGATGTC CCGTGATGCT GTGAATAAGA TCGTTGAGCG TATGCACACT 
CCTATTAACC GTTGAAGAGA CAACAATGTC TTAAAATGGC ACTCTCAATA 
AGAATACTAG ATCACAAGGA ATCCCGCATG TAGTATCTGT ACCGGTTCAT 
TGTTTGTTAG CTTTTTGGTC TGGTTTTGCA ACATAGAATG GTGAAGGATT 
GAGTTTTAAA ATAATGAATG GTGAT

Gene models with high sequence identity

  1. AT2G20060.1 [+] show detail - Ribosomal protein L4/L1 family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Ribosomal protein L4 2.5e-92
HMMPanther Ribosomal protein L4/L1e, bacterial-type 2.5e-92
HMMPfam Ribosomal protein L4/L1e 2.3e-64
superfamily Ribosomal protein L4/L1e 5.9e-71
Gene3D no description 1.4e-38

See the detailed result >

AT2G20060.1

Model type
Protein coding
Short Description
Ribosomal protein L4/L1 family
Computational Description
Ribosomal protein L4/L1 family; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: ribosomal protein L4 (TAIR:AT1G07320.4); Has 8236 Blast hits to 8236 proteins in 2694 species: Archae - 70; Bacteria - 5573; Metazoa - 121; Fungi - 129; Plants - 100; Viruses - 0; Other Eukaryotes - 2243 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-65-I16 introduced

  • F27925 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

1 mutant line founds