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  3. RAFL09-65-L24

RAFL09-65-L24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08624)

full reading [+] show sequence

Nucleotide sequence: RAFL09-65-L24 - full reading 
AATCAAATCC AGTTCATCAG AGATCAAAGA TGGCTATTGC ACGAACTGGA 
GTTTATGTTG ATGATTACCT TGAGTATGCA AGCACTTTCC CTGCAGAGCT 
ACAAAGATTA CTAAACACAG TTCGCGAACT AGACGAGAGA TCTCAATCGC 
TTATAAATCA GACAAGACAG CAAACTAAGT ATTGCTTAGG GCTTGCTTCA 
CAGAGTTCTA AAAAGGGTAA TGGTAATCAT TACAATAATG GTGGTCTTGA 
TGAAGAGGAA ACGATTGAGA AAATGCGTAA AGAGATTGAG TCTAGTCAGG 
AAAATGCGTT AAGTTTGTGT ACCGAGAAGG TTTTATTGGC CCGACAAGCG 
TATGATCTTA TAGATAGTCA TGTAAAACGA CTTGATGAAG ATCTGAATAA 
TTTTGCAGAA GATTTAAAGC AAGAGGGAAA AATTCCACCA GACGAGCCCT 
CTGTTCTTCC TCCACTACCT ATAGTTCCTA AAGCGGAAAA GCGTAAGTCC 
TTCTATGGCA CACCTCAGCC CAAGAAGATT GATTATAGAG ATAGAGACTG 
GGATCGTGAC AGGGATTTTG AGCTCATGCC TCCTCCAGGA AGCAATCGGA 
AAGACCTTAT GCCAATTGAA GAGCAGCCAA TCGATCCAAA CGAACCAACT 
TACTGTGTCT GCCATCAGGT GTCCTTTGGA GACATGATTG CCTGTGACAA 
TGAGAATGTG AGCCTGCTCT CCCAGCATCT TATTATTTAT TTTTTAATGT 
ATAGCTGTTA TGATGAAACC TTTTGTTCCT GTTTCGACAG TGCCAAGGAG 
GTGAATGGTT TCACTATACA TGCGTTGGCC TCACACCTGA GACCAGATTC 
AAAGGGAAAT GGTACTGCCC CACCTGCAGA CTCCTCCCAC AGTCACACTA 
ATATCATTTG TACCTGTGAG AAGGTATTGC TTTACTATCA TCAGAACTAA 
GCTCTCCTCC TGCAATTTCC ATGCATTCTG TAGCTAATAT AATACGTATG 
GAGATTTGCA CGTACTTATG ATATTAATTC TCATAGGTGC CACTGGCATC 
TTCTTTGGCA CCTTCCCTTC ATGACCAATG CCACCAAACT CATCTTTCTT 
GTTACCCAAC ATCTAGCAAG TGCAAGTAGA AGCAAACTTT AGATGGAGAA 
ATCATCATGT TTTGTAAACC TCGGGTTAAT TCGTGGAGCA TATATTTTGT 
ATATCAATTG TATTTGGGTA TTGGTGGGCA TTTTCCGTTT TATTCTACTA 
GTATCGATAT TTACATCTGC TTCTTTCTTT CTTTTTTCCC CTCAAACCAT 
GAGCCTTTGT ATTGATCAAA TGACATGTAC AAAGGTTTTG TTCATCAGAA 
GGAATTTCAC T

Gene models with high sequence identity

  1. AT1G54390.1 [+] show detail - PHD finger protein-related
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 2e-12
HMMPanther ING-RELATED 7.2e-214
HMMPanther INHIBITOR OF GROWTH 7.2e-214
Coil coiled-coil 0
Coil coiled-coil 0

See the detailed result >

AT1G54390.1

Model type
Protein coding
Short Description
PHD finger protein-related
Curator Summary
ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description
INHIBITOR OF GROWTH 2 (ING2); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G24010.1); Has 1029 Blast hits to 893 proteins in 166 species: Archae - 2; Bacteria - 0; Metazoa - 705; Fungi - 173; Plants - 97; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-65-L24 introduced

  • F07427 - seed::increased size / seed::increased length
  • F18604 - Specific phenotypes were NOT observed.
  • F20748 - Specific phenotypes were NOT observed.
  • F20936 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found