1. Home
  2. Full-length cDNAs
  3. RAFL09-65-M10

RAFL09-65-M10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09883)

full reading [+] show sequence

Nucleotide sequence: RAFL09-65-M10 - full reading 
ATGATCGCTT TCGTTATATT CATTCTCTCT TTTCTCTTTC CATTTTGGCT 
CCCACCGACG TCATCAATCT CTACCGGAGA CTTCCGCCGA TTCTCACACC 
GTTCTTCTTC TCTCCTTCCG ATTCCGGATT CCAATTTCGT TCCTTTTTTG 
TTTTCTCTCA AAACCCCTAA ATTTTCTTCC TTTCTTCGAT CTGGATTTTT 
TGTGTTCCCC AAATTTCAAG ACTTTGATCT GATTCCTTCT AAGATTTCTC 
CAAAGCAAAG ATCTTTTTTT TGTTTTTTGG GATCTCTGTA TTGTTGATGG 
GCACAACTAG GGTCTGCTCG GAGGTTTCTT CTGGATCTTC GAAATCGCTT 
AGCCAATCTC TCACGGTATC GACCTCTACC ACAGAAACAG TCAATGGTTT 
CCATGAATTC AAGATCTGTG GGTACTCTCT CGCTAAAGGT GTTGGTGTCG 
GCAAATACGT CGCTTCCGAT ACGTTTATGG TCGGTGGTTA CTCGTGGGCA 
ATCTACTTTT ATCCAGATGG GAAGAGTCCG GAGGATAACT CGTCTTACGT 
TTCTTTGTTC ATAGCTCTTG CTAGCGAAGG AGCTGATGTT AGGGCTTTGT 
TTGAGCTCAC GCTTGTGGAT CAGAGTGGTA ATGGGAAGCA TAAGGTTCAT 
AGCCATTTTG GTAGAGCTCT CGATAGCGGT CCCTATACTC TCAAGTATCG 
TGGAAGCATG TGGGGATACA AGCGGTTTTT CAGGAGGTCC AGTCTAGAAT 
CGTCGGATTA TTTGAAGGAG AATAGTCTCT TGGTTAGGTG CCGTGTGGGT 
GTGGTGAAGT CAGTTACGGA GGGACCGAGG TATTACAATA TCCCTGTGCC 
AGTTTCTAAC TTGGGACAAC AGTTGGGAAA TTTATTGGAG AGTGGGAAAG 
GCTGTGATGT TGTTTTCCAA GTTGATGGAG AAACCTTCAA CGCACACAAA 
TTGGTTCTTG CAACGCGTTC CCCGGTTTTC AACGCACAGC TTTTTGGCCC 
TTTAGGAGAC CGAAATACCA AATGCATAAC GATAGAAGAC ATGGAAGCAC 
CCATTTTCAA GGTATTGCTC CATTTTATCT ACTGGGACGA ATTGCCTGAT 
ATGCAAGAGT TAATAGGAAC AGACTCTACA TTGGCGTCTA CTCTTGTGGC 
TCAGCATCTA CTAGCAGCGG CAGACCGTTA TGCTCTTGAG CGGCTTAAAG 
CAATCTGTGA GTCAAAACTC TGTGAAGGGG TTGCCATAAA CACGGTTGCA 
ACTACTTTGG CCCTAGCAGA GCAGCATCAT TGTTTGCAGC TAAAAGCAGT 
GTGTCTCAAA TTCGTGGCAC TGCCAGAGAA CCTGAAAGCT GTGATGCAAA 
CAGATGGGTT TGATTATCTG AAAGAGAGTT GCCCATCTTT ACTAACGGAG 
CTATTGCAGT ATGTGGCGAG GCTAAGTGAA CACTCTGTTA TAGTATCTGG 
ACATCGAAAA GAAATATTTG CCGATGGTTG TGACGCGAGT GGAAGACGAG 
TGAAGCCCCG GTTGCACTGA ATGGGAGAGA AAGAAGAAAG ATTTGTGCAT 
TGTATAATCT CTGTTATGGA TAATGGCTGA TCTAATCGGA TCTAGCAAGT 
ACAATGAATC GTTTTCAACG CGTTTTCTCA TAAATCAAAG ATCCAATGAA 
ATTTGGGGTT A

Gene models with high sequence identity

  1. AT5G19000.1 [+] show detail - BTB-POZ and MATH domain 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan BTB/POZ-like 17.314
ProfileScan MATH 22.769
HMMPfam BTB/POZ 1.1e-24
HMMPfam MATH 2.6e-06
superfamily TRAF-like 9.5e-38
superfamily BTB/POZ fold 3.2e-31
Gene3D TRAF-type 3.7e-07
Gene3D BTB/POZ fold 2.2e-27
HMMSmart MATH 2.8e-11
HMMSmart BTB/POZ-like 5e-25
HMMPanther BTB-RELATED 3.1e-88
HMMPanther Kelch related 3.1e-88

See the detailed result >

AT5G19000.1

Model type
Protein coding
Short Description
BTB-POZ and MATH domain 1
Computational Description
BTB-POZ and MATH domain 1 (BPM1); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 2 (TAIR:AT3G06190.1); Has 5705 Blast hits to 5596 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 3900; Fungi - 59; Plants - 1504; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-65-M10 introduced

  • F14535 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found