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  3. RAFL09-65-P06

RAFL09-65-P06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09884)

full reading [+] show sequence

Nucleotide sequence: RAFL09-65-P06 - full reading 
GAAACTCTGT TTTAGACTCT TTTATTTGTT AGACTTTTTT GTTTGTTTCG 
TCGTTGTTGT TTTTTGACCA AACCACCATG CGATTCGTCG CGCCACCGCC 
TCGTTCCGGC GATAACTCAC CGTCACCTTC ACCATCTTCC GGTATATCCG 
AAGAGATTCT CTCCCGTTCT TCGGATCCTC CTTTAGAGTT TAGTCCTCCA 
TTGATCGCCA TGGTGGTGGT TCTAGCCGCC GCTTTTCTAT TCGTAACTTA 
CTCTCGTCTC ATCTCCCGCC GTTTTCTTTC ACCTCTATTC CGTCGTTTTA 
GAAGGTGGCG ATGCCGTCGA CGCCGTCTCC TTCACTTATC TTCAGCTTCC 
TCTGCTTCAA CTTCATCCTC CGATCTCCGA TCATTTTCAC CTTTCCCTTT 
CGACTCTTTT CATTACTCTT CTTACTCACC TTACGGATTA GACGATTCCG 
TTATCAAAAC TTTACCGCTG TTTCTCTACT CCGCCGCTGC TTGCACCGGA 
AAACCCGCGG TGGGGAAAAC CTCCGCCGCC AATTGCAGAG ATTGTGCTGT 
TTGTTTGTTG GAATTCGAAG AAGGTGATTA TGTACGAACA CTTCCGTTAT 
GCTTCCATGC TTTTCACCTT GAATGCATCG ATGAATGGCT CCGATCTCAC 
CCTAACTGTC CGTTATGCCG TACGGCGATT CTCGGATCCG CCGGAGTGTT 
AACGCCTATG TCGCCGTTCG TTCCGTTAAT GGCTCCTCGA ATTCGTCCGA 
GTCTCGATGA TGAAGAGAAT AACGCGATCA TCATCCGCGG CGAAATCACA 
CCGTCGCGGA GCAATTGGAA CACAATCGCT GCCGATACGA CGAACGATCA 
GGAGATCAGA GCGTCGGTGG AAGAGCAATC ATCACCGGCG ATTTCTCGGT 
TCCGGGAGCT GAAGAGATCG TACTCGTTCG AATGCGAGAG AGAATCTGAA 
TCAGAGAGAG TAACGATGGA GCCAGCGACG GTGTCTCCAT GGAGATACCG 
GAGATCTACA TGGAACAAAC GTCAATCACC GTTCGGAAAC CTAATATCGA 
AATCAAGAGT GTTCTCGTTC CGTTACTACA GAAGCACGAA ATCACCGTTC 
TTCCGACGGA GATCATCGGC GGGAGTGTTT TACCCGATAT CAGAACGGAT 
TCCAGCGACG GGAAGCTCAT CGCGGCGAAC GAAATCGATG ACGAGTCCGA 
TGTTCTTCAG AACAGCACCG CACTCATCGA GCCGGTTAAG ATGCGGAGAT 
CCAGAGGCAC TGTTATCGCC GGAGAGATGG AGAAGAAGAG ACACGTGTAG 
GGCAGAGATG TAAGATGAAA TTTGGACGGT GGTGATGATA AAAAGAAATA 
TTGAAGTGGA AGGAGAGAGC ATTAATGGAA TGTGGGGTTT AAGCATTTAA 
TGGAATTAAA ATGAACGAAA CAGAAGAAGA TAGAGAGATT CAGAAATTGC 
TCAGCTGCTC ACATTCACAA CAAGACAAAA GACGCCAAGA CGATGAAGGT 
TTTGGAGCCT GTACGACGGC GTTTTGGCTG ATGATTCGTT TTTTCCTCTC 
TTTGGAGTTA TCAAAATGCA TTAACTTCAA AAGCTGCCAA AGTTATCATA 
GAAACGAAAG TCAACAACAC ATTGAATTTC GTTTCTATAA TAACTTTACA 
TCGTCGGTGG CTTTACTGTT TTCTGTTACC GAATTTTATG TTCAAACTTT 
TAGCTGTCGA TTTAATTTTT GACCAAATTT

Gene models with high sequence identity

  1. AT3G18930.1 [+] show detail - RING/U-box superfamily protein
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
HMMSmart Zinc finger, RING-type 5.3e-06
Gene3D no description 5.7e-14
superfamily RING/U-box 5.5e-15
ProfileScan Zinc finger, RING-type 12.179
HMMPfam Zinc finger, C3HC4 RING-type 2e-06
HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 6.3e-16

See the detailed result >

AT3G18930.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G03550.1); Has 8769 Blast hits to 8742 proteins in 286 species: Archae - 0; Bacteria - 0; Metazoa - 2146; Fungi - 644; Plants - 4854; Viruses - 63; Other Eukaryotes - 1062 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-65-P06 introduced

  • F08535 - rosette leaf::present in greater numbers in organism / whole plant::decreased height / stem::abnormal

Mutant lines with disrupted or induced

5 mutant lines found