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RAFL09-66-H13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08641)

full reading [+] show sequence

Nucleotide sequence: RAFL09-66-H13 - full reading 
AGACTGAAAA AAATGGCGGC ATCATCATCT CATCTCTTCG CACTCCCTTC 
GCCTGCTTCT CCGTTTCTAT CTGCACCAAA CCGGAATCGA GTTCGTGTTC 
TTGCGAAATC ATGCCCGGAG AATCAGAGCT TCGACTCCAA CGATTCGGAT 
TCTTCCTCAG AGACTACCCA CAAAGCCCAG GGAGATCAGA AATCAGTGTC 
ACGGAGACAG TGGATGACGG CATGTGTGTG CGCATCTGCA GCTTTAATTA 
GCAATTCTTA TACCTTTGTC TCTGTACAAA GCGCAGCCGC TTTAGACAAG 
AAACCAGGAG GTTCATGTCG TAACTGCCAG GGCAGTGGTG CTGTTCTTTG 
TGATATGTGT GGTGGTACAG GAAAATGGAA AGCTCTCAAC CGAAAACGTG 
CGAAAGATGT ATATGAGTTT ACGGAATGTC CAAACTGTTA CGGTCGAGGT 
AAGCTTGTTT GTCCGGTCTG TTTAGGTACA GGTTTACCAA ACAACAAAGG 
CCTTCTTAGA AGGCCTGGTG CTCGTGAGCT ACTCGAAAAG ATGTACAATG 
GTCGGCTTCT TCCTGATTCA TGAGAAGATT GTTACTGCAA ATATGATTTT 
AAGCACAGAG CCAGTAGACA TGATGATAGA AGCGGATGAA AACTTACACA 
TTGAGGATGC ATGGAAAGCT ATAGAAGAAT GTATCGAATT CAACATGTTT 
TTATAATGCT GCTAGGTTTG TGTTGTAAAT TCTATAAACA TAAAACTTTC 
CTTCTTCCCC ATACAGACTA GACGAATCAG TTTCGACTAA GATACTCACT 
CACTCACCTA TGCATTTAGG CATATAGAAT CACACACTTT GATT

Gene models with high sequence identity

  1. AT2G34860.1 [+] show detail - DnaJ/Hsp40 cysteine-rich domain superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Heat shock protein DnaJ, cysteine-rich domain 0.0000000075
Gene3D Heat shock protein DnaJ, cysteine-rich domain 0.00028

See the detailed result >

AT2G34860.1

Model type
Protein coding
Short Description
DnaJ/Hsp40 cysteine-rich domain superfamily protein
Computational Description
embryo sac development arrest 3 (EDA3); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: megagametogenesis; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305); Has 773 Blast hits to 773 proteins in 260 species: Archae - 32; Bacteria - 427; Metazoa - 13; Fungi - 2; Plants - 175; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-66-H13 introduced

  • F06121 - rosette leaf::desaturated green / rosette leaf::decreased size / cauline leaf::decreased size / stem::decreased thickness / whole plant::decreased height / sporophyte vegetative stage::decreased speed / stem::abnormal / stem::abnormal
  • F15314 - Specific phenotypes were NOT observed.
  • F19840 - Specific phenotypes were NOT observed.
  • F26038 - Specific phenotypes were NOT observed.
  • F26929 - seed::increased size

Mutant lines with disrupted or induced

5 mutant lines found