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RAFL09-66-J21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08646)

full reading [+] show sequence

Nucleotide sequence: RAFL09-66-J21 - full reading 
AGCCGAGAAA CAACGCAAAC TCCGATTGAG AGGTGTTTGC ATGATTCCTG 
AGCTTGTCTG TGTCAATAGT GAGGCACTAC ATCGAGGAAT AAGAAAGAAG 
ATCTAAGGAG CTAAAGCTAT TATGTCAACG AACACTGAAT CTTCTTCTTA 
TTCTTCTCTT CCTAGTCAAA GGCTTTTGGG TAAAGTGGCA TTGATCACTG 
GAGGAGCCAC AGGGATAGGT GAGAGCATTG TTCGTCTGTT CCACAAGCAC 
GGTGCCAAAG TCTGCATTGT TGATCTGCAA GATGATCTCG GAGGTGAGGT 
GTGTAAAAGT CTGCTTCGTG GTGAGTCCAA GGAGACGGCT TTTTTCATCC 
ATGGCGATGT TAGAGTGGAA GATGACATTA GCAATGCGGT TGACTTTGCA 
GTCAAAAATT TTGGGACGCT TGATATACTT ATCAACAATG CAGGATTATG 
TGGAGCACCG TGCCCTGATA TTCGTAATTA TAGTTTGAGT GAGTTCGAGA 
TGACCTTTGA TGTGAATGTG AAAGGAGCTT TTCTAAGCAT GAAACATGCA 
GCTCGTGTAA TGATACCGGA GAAGAAAGGG TCGATAGTTT CCTTATGTAG 
TGTGGGAGGT GTTGTGGGAG GCGTTGGTCC ACATTCTTAT GTTGGTTCCA 
AGCATGCTGT TCTAGGCTTG ACTAGGAGTG TTGCAGCGGA GCTTGGACAG 
CACGGGATAC GTGTGAACTG TGTTTCGCCT TACGCGGTTG CAACTAAACT 
CGCTTTGGCT CATTTGCCGG AGGAAGAAAG AACGGAGGAT GCATTTGTTG 
GTTTCAGGAA TTTTGCTGCT GCAAACGCGA ATCTAAAAGG GGTGGAACTG 
ACGGTTGATG ATGTAGCGAA CGCTGTTCTG TTTTTGGCTA GCGATGACTC 
GCGGTACATA AGCGGAGATA ATTTGATGAT TGATGGAGGA TTCACTTGCA 
CTAACCACTC CTTTAAAGTC TTCAGATGAT GCATTTTGCT AAAGAATGTT 
GTTTAATGTT TATTGTCCGC CAATTTATCA TGTCTATCAA ATAATTTAAC 
TGTGGAGCTT ATTGTGGTTT TAATTGTTAC TTTTAGCATT GTAGAAATGT 
TTGATGTTAA CTACATTTCT TACTGGTAGA CATTGAACAA AATCAGATTC 
TCATAATGAT TAAAAAGATT GAGTAG

Gene models with high sequence identity

  1. AT1G52340.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily NAD(P)-binding domain 6.9e-71
FPrintScan Glucose/ribitol dehydrogenase 2.3e-37
FPrintScan Glucose/ribitol dehydrogenase 2.3e-37
FPrintScan Glucose/ribitol dehydrogenase 2.3e-37
FPrintScan Glucose/ribitol dehydrogenase 2.3e-37
FPrintScan Glucose/ribitol dehydrogenase 2.3e-37
FPrintScan Glucose/ribitol dehydrogenase 2.3e-37
FPrintScan Short-chain dehydrogenase/reductase SDR 0.0000000000042
FPrintScan Short-chain dehydrogenase/reductase SDR 0.0000000000042
FPrintScan Short-chain dehydrogenase/reductase SDR 0.0000000000042
Gene3D NAD(P)-binding domain 4.1e-67
HMMPanther SHORT CHAIN ALCOHOL DEHYDROGENASE 3.6e-150
HMMPanther Short-chain dehydrogenase/reductase SDR 3.6e-150
HMMPfam Short-chain dehydrogenase/reductase SDR 7.7e-27

See the detailed result >

AT1G52340.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Curator Summary
Encodes a cytosolic short-chain dehydrogenase/reductase involved in the conversion of xanthoxin to ABA-aldehyde during ABA biosynthesis. Mutants are insensitive to sucrose and glucose.
Computational Description
ABA DEFICIENT 2 (ABA2); CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G51680.1); Has 120353 Blast hits to 120130 proteins in 3578 species: Archae - 983; Bacteria - 78428; Metazoa - 5777; Fungi - 6239; Plants - 2770; Viruses - 5; Other Eukaryotes - 26151 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-66-J21 introduced

  • F08943 - seed::increased size
  • F09949 - Specific phenotypes were NOT observed.
  • F27150 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found