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  3. RAFL09-66-M08

RAFL09-66-M08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08649)

full reading [+] show sequence

Nucleotide sequence: RAFL09-66-M08 - full reading 
AAACATGCCT AACTCGATTC TCTTTCTTCT TCTTTCATTC CTGTATCTCA 
CAAACTGCGT TGCTCAATCT CCATCACAAA CTTGTCCTTT AGATTTCTCT 
CATGTCCTAA CAATCCCATG GAACACAACA GATTGTCAAA AGTCCGACAA 
ATCAGCCGAT AGCAAGAACA GTTGTTGCCA ATCTCTTTTA ACTCTAATCG 
GAATCCCTCT AGCTCATCGT CTCAAACAAA CTTCCAATTT CCGTCTCCCA 
AATCTCGCTA CTTCAATCTC TTGTCTCAAC AATCTCCAAA CGAAGCTTAG 
TTCACTCTCT CTATCTTCGA ATCTCACCTC TCTCTGTTTC GATCCGAATC 
AGTTCGTCAT CAATAACGAA ACCTGTGCTG GAATCCAAAC GACTCAAGAT 
TGGGTATCTC GTCTCGGTCC ATCTACGGCG CTTGACTCCG CCTGTAGCAG 
TGGTCTCACT GATCTAACGC GATGCGACGC TTGCGTGGCG GCTGGGTTTA 
GGGTTCAAAA ACAGCTCATC ACTTTGGACG GTAATAGCTC TCACGGTGTT 
TATTGTTACC ATTTTGTGGT TACTTACGCT GCTGGTATTG TTAACAAGAA 
AGGACCTGAG AGTGATGATG CTTTGTCTTG TCTCTTCTCT TTGAGTTTGA 
GATCTCCATT GAACTCAAAG AAGAAAAGAC ACACGGTGGC TCTTGCTTTA 
GGGATAACCG GAGCTATTTT CGGGGCTCTG GTTATTGCCG GTTTGATTTG 
TTTGTATTTC CGGTTTGGTA AAGCTGTTAA AGGAGGAGAG GTTGGTTGGG 
AGGATCAAGG GTCTAGACCG AAATGGAGAC CAAACACTGG CTCTATCTGG 
TTCAAAATCG AGGAACTAGA GAAAGCTACG AATAACTTCT CGCAGAAGAA 
TTTCATCGGT CGAGGCGGGT TTGGTTTTGT TTACAAAGGG GTTTTACCAG 
ATGGATCGGT TATCGCGGTT AAGAAGGTGA TAGAGTCTGA GTTTCAAGGG 
GATGCAGAGT TTCGTAATGA GGTTGAGATC ATTAGCAATT TGAAACATAG 
GAATCTTGTT CCGCTTAGAG GTTGTAGTAT GGTGGATGAT GATAGTGAGA 
GTCAGAGATA TCTTGTTTAT GATTACATGT CTAATGGAAA TCTCGATGAT 
CACTTGTTTC CTCGAGGTGA GACTACGAAG ATGCCATTGA GCTGGCCTCA 
GAGAAAGAGC ATCATTTTGG ATGTGGCTAA AGGGTTGGCT TATTTGCATT 
ACGGTGTGAA ACCCGCTATT TATCACCGGG ATATTAAAGG TACGAACATA 
TTGTTAGATG TCGATATGAG AGCGAGAGTT GCGGATTTCG GTTTAGCTAA 
ACAGAGTAGA GAAGGAGAGT CTCATCTCAC TACCAGAGTT GCGGGAACAC 
ACGGTTACTT GGCTCCAGAG TATGCCCTCT ATGGTCAATT AACCGAGAAA 
AGCGATGTGT ATAGCTTCGG GGTTGTTATA TTGGAGATCA TGTGTGGAAG 
GAAAGCTCTT GATCTGTCTA CTTCTGGATC ACCAAACACT TTTCTGATCA 
CAGATTGGGC TTGGTCATTG GTAAAAGCAG GGAAAACAGA GGAAGCTCTT 
GAGCAGTCTT TGTTGAGAGA GGAAGGCTCA GGGCTCTCGA ATCCGAAAGG 
GATAATGGAG AGATTCTTGC AAGTTGGGAT ATTGTGTGCC CATGTATTGG 
TTGTTTTAAG GCCAACAATA TTAGATGCAT TGAAAATGCT TGAAGGAGAC 
ATCGAGGTTC CTCCTATTCC GGACCGACCA GTCCCGCTCG CGCATCCTTC 
GTACCGTATG GACGGAAACG GATTCACAAT ATCGCCTGCG CTTAGCGGAC 
TACAAATACA TTCCGGAGAT ATGCTCAGAT GAAAAAACTA GGCTCATGTG 
AGATTTTATT TTGTAAATAT TTGAAAGCAA CGATCACGTC TTTTGATTAC 
ATCATGTAAA ACAATTTCAG AATGTTGTAG TATATCATAA GTAGGGAAAA 
CATATAGTTC ATTGTAGGAT TATATTCTAA ATCAAAGTAG AGGCGAAGGC 
TGAGATGCGG GGGTGAGGGC GGTAGCTGGT GGAAGCCTTC CGGTACAAGT 
GCAAAAGTTA TTAAGGCACT CACATTTGGT GCAGTGGTTC ACAGTCCTGC 
ACCATCTTGA CACTAATGGT CCTCTCGCCT CAGCCACCAT GTAAAATTCT 
GCAACCATTC AAATTTGTGT TTATTTTTGT CCGTTGCAAA ATTTATATGT 
ATATAAATAA GAAGAAATTA CATATTTTTT TT

Gene models with high sequence identity

  1. AT1G11050.1 [+] show detail - Protein kinase superfamily protein
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

Program Description E-value
HMMSmart Serine/threonine-protein kinase domain 2.6e-30
HMMSmart Tyrosine-protein kinase, catalytic domain 8.8e-15
HMMPfam Serine/threonine-protein kinase-like domain 3.6e-43
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0
superfamily Protein kinase-like domain 6.6e-77
HMMPanther SER/THR RECEPTOR-LIKE PROTEIN KINASE 2e-283
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 2e-283
ProfileScan Protein kinase, catalytic domain 35.651
Gene3D no description 1.2e-19
Gene3D no description 1.7e-46

See the detailed result >

AT1G11050.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: receptor-like kinase in in flowers 3 (TAIR:AT2G48010.1); Has 115297 Blast hits to 114175 proteins in 4324 species: Archae - 104; Bacteria - 13350; Metazoa - 42303; Fungi - 9816; Plants - 32853; Viruses - 335; Other Eukaryotes - 16536 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-66-M08 introduced

  • F10408 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found