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  3. RAFL09-66-O06

RAFL09-66-O06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08654)

full reading [+] show sequence

Nucleotide sequence: RAFL09-66-O06 - full reading 
TTTCATCAAC ATAAAACATC ATATGAAAAG GTTGTCGGAT CCACAGAATT 
TATTTTTCTC CATTGGGACT GGATGAGTAG GCAGTTTCTT GTCTTTGCTG 
AGTTGCTGGA GACAAGCTCA GCAACTGGTC AGAGCTTAAC ATCCTCAAAC 
CAAGGAACTG CGGAAATATC TTTGACTGAG TTTGAGTTTT ACCCTGCCTA 
TTATTATCAG TTGGCTGCTC ATTACTTGAA GGATAAGAAA TCTGCCCTGG 
AACTGTTGTT GTCAATGTCT GAAATAGCTC AAGAGATTGA TAGCAGCTCT 
GCATCTATTA CTCCTTCAGT CTATGTGGGT CAGTTCGCTC AGTTGCTTGA 
GAAGGGAGAA GCTATTACAC TTCACTCTAT AACGGATGAA GAGTACACAC 
GGTATACAAT TTCAGAAGCA AAGAGAGTTC AGGATTCCCT TCAAATTATT 
GCTTGGCTGA AGAGATCTTA TGAATCATTT ACCAACCTTA AAGCCCAGAG 
GATGGCTGCT CTTTGTGCCT TTGAAGTAGC CCGGGAGTAC TTTGATTTGG 
CTGATCCCAA CAACGCAAAA TTCTTTTTCG ATATTGCTGC AAACTTGTAC 
AGACAAGAAG GTTGGGTAAC TTTGCTCTGG GAGGTGTTGG GTTACCTGCG 
AGAGTGTTCG AGAAACCTTG ATGCTTTGAA AGATTTTGTA GAGTTTTCAC 
TTGAAATGGT TGCCCTGCCT GTAACATCTT ATGAGAATTC TGGGAACTTA 
AGAAACAAAA ATTATGGTCC TGGAGGTCCT GCAACAATTT CAGGAAGAGA 
AAGTATACAT CAAGAAGTTT TTACTCTTGT TTGTCGTGAA GCCGAGCTGT 
TATCATCTAC CGAAGGAAGT GGGTTCAAAT TAGCCACTGA TAGCCCTCTT 
CATCTCGAGA TTGATCTTGT CAGTCCTCTG AGACCTGTTC TCCTAGCTTC 
AGTTGCTTTT CACGATCAAA TGATCAAGCC TCACGCTTTG TGCTCTTTTA 
CGTTGTCACT ACTTTCTCAT TTACCTCTTC CAGTTGAAAT AGATCATCTA 
GAAGTTCAGT TTAATCAATC TACATGCAAC TTTGTCATCA GAAATTCCCA 
GAGGCCTCTG TGGGCTTCGG CGTCTAACAC TGTGAAAAGT GGTAGCCAAG 
TGGAGAATGC GCCATTGCTG GTGCTTGTGC CGAATAATTG GTTAAGGTTG 
ACATATGCAA TCAAGTCTGA GCAAAGCGGC AAGCTTGAGT GTCTTTCAGT 
TCTTGCAAAA TTGGGGCCTC TTTTCACAAT CTGTTCAAGA GCCGAGAGTC 
CTGCTGCAAT GGAGGATTTA CCTGTCTGGA AGCATGAAAA TCGTGTTGAA 
TCTCTGCCAA CAAAGGACCC AGTTCTTGCA GTATTTGGCC AGAAAGCTAC 
TCAAGTTGAT GAACCCGAAC CACAGGTGGA CGTCAGTCTA GGTGCTTCTG 
GTCCTGCCCT AGTTGGAGAA GATTTTGCGA TGCCAATCGT GGTAACTTCA 
AAGGGTCATG CCGTATACAG TGGTGAATTG AAGATTAATC TAGTTGATGT 
GGGTGGTGGT GGTTTGTTTA GCCCAAGAGA AGCAGAACCG TTTTCTCTAG 
AAAGCCATCA TGTTGAAATC TGTGGTATTG ATGGGGCAGA GGGCAACAAT 
GAATCCGAGT CTGAAACAGG GAGCATAAAG AAAATTCAGC AATCTTTTGG 
GCTGGTTTCT GTTCCATACC TGAAGGAAGG AGAATCATGG TCGTGCAAAC 
TGGAAATCAA GTGGCATAGA CCCAAGCCTG TGATGCTTTT TGTGTCATTG 
GGTTACTTGC CACATGGCAG TGAAGCCAAT ACCCAAAAAG TTCACATACA 
CAAGAGCTTG CAGATTGAAG GGAAGATGCC TCTTTTAATA AGCAATCGTT 
TTATGTTGCC ATATAGAAGG GATCACCTAT TGCTCAATAG GATAAAGCCA 
GCCCCTGATT CTGAAGACGT GTCTTCTCTG CCGCTGAACG AAAAAAGTGT 
GTTAGTTGTC AGTGCCAAAA ATTGCTCAGA AATAGCGCTG AAACTGGTGT 
CCATGTCCAT TGAATTTGAT GATGAACAAG GGGAAACTTC ATGTTTGATT 
CAGCAGGGTG GTGGGTGTGG AGACTCCCCA AGCTCTGCAA ATCTTGCGCC 
AGGGGAAGAG TTCAAAAAGG TTTTCACAGT CATACCAACG ACGAGAACTC 
CAAAGCTTGG TTTGGGATCA ATACATTTAA AATGGAGGAG AGAGGGAGGT 
AACATAACAG AGGCATATGT TTCAACAAAG CACAAACTTC CTGAAGTAAA 
TGTGGAGGCA TCACCACTGG TAATGAGTTT GGACTCTCCT CCATATGTCA 
TTCTTGGAGA ACCCTTCACT TACGCTGTTA GAATCTGCAA CCAGACACAG 
TTGCTGCAAG AAGCAAAGTT TGGTCTGGCT GATGCACAGA GTTTTGTCCT 
GTCTGGGTCT CACAGCAATA CGGTTTCAGT CCTTCCCAAG TCAGAACACG 
TCTTAAGTTA TAAGCTAGTG CCTCTGACTT GCGGTGAACA GCAACTCCCA 
AAGATAACTT TGACATCAGC GCGATATGCT GCTGAGTTTC AGCCATCTGC 
GGTTGCTTCA AGTGTCTTTG TGTTTCCCTC AGCCCCACAA GCCGAGAAAG 
CCATCTCTAC CAGCAAGTAG TGTAACTTCG CATGACTTGG GTTTTCAGAT 
GTCTATGCAG TTTCAGCCAT ATGTGGTTAA GACAGACATA TTGAATCAGT 
TTGGTAAATT TTGATCCTGA AGTGTCGCCT ATGTTGTATT TTCATTTTTC 
CTTCTGTTGT TGATAATAAT GGATATTTTT TGGAGAACCC AAACTAGACA 
CATAGGATTA GGACACAATC TGTTTTGAGA TGTGTTTTGT GGCAACTGTT 
TTTCTTC

Gene models with high sequence identity

  1. AT5G65950.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: ce...
    E-value: 0; Score: 99.97

 

InterPro Scan Digest

Program Description E-value
HMMPfam Foie gras liver health family 1 3.6e-68
HMMPfam Protein of unknown function DUF1683, C-terminal 2e-30
HMMPanther FOIE GRAS 6.2e-167

See the detailed result >

AT5G65950.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1683, C-terminal (InterPro:IPR012880), Foie gras liver health family 1 (InterPro:IPR021773); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-66-O06 introduced

  • F07327 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found