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  3. RAFL09-67-A02

RAFL09-67-A02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09890)

full reading [+] show sequence

Nucleotide sequence: RAFL09-67-A02 - full reading 
AGAAGATTAA ACATTCCTCT CGCCGGAGAA CTAACTGCTC GATAGATAGA 
GATAGAGAGA GAGCTCTGAT AACTGCCATT CTGTCTCTAT CTGCTTCCTC 
TAGATACACG TTAGTTTTTT TTTCTTTGAA AGGGGCTAAA TTTCGTACAC 
ACGACCTATT TCTTCTTCTT ATTGGATTTT GTAGAGAAAA CTTTATTATA 
TAGGTTTCTG GGGAATCTTC TGAGCCGTTT AGAACAAGGA TTTAGGCAAA 
AATATGGTCA GTTAGTTTCT TGTGCTAGCA ATTTTGAATG GGAGATTGCG 
ACGACGACGA CTAGTCTCTC CTCGAATCAG GGTTTATAGT TGTTGTTGAT 
AGAGATATTG AATTGGAACC AAAAGAACTC AATGATAGAG TAGTGAATTT 
TGGATGTAGT GTTTTTCTCA TCAACGGAGT AATAATAACA ATAATAATGA 
GTAGCGATGA TACGATTGAG GAGAGTTTGC TTGTGGATCC CAAATTGTTG 
TTCATCGGCT CCAAGATTGG TGAAGGCGCT CACGGCAAAG TCTACCAAGG 
AAGGTATGGT CGTCAGATTG TTGCAATCAA AGTTGTCAAC CGGGGCTCCA 
AACCTGACCA GCAATCTTCT CTCGAGAGCC GTTTCGTCCG TGAGGTCAAT 
ATGATGTCCC GCGTTCAACA CCATAACCTT GTCAAGTTTA TTGGAGCGTG 
CAAAGATCCT TTAATGGTAA TAGTAACAGA GCTTCTCCCA GGGATGTCTC 
TCCGTAAATA TCTCACCAGC ATCCGTCCTC AGTTGCTCCA TCTCCCTCTT 
GCTCTCTCCT TTGCCCTTGA CATCGCCCGT GCCTTGCACT GCTTACACGC 
CAATGGTATC ATTCACAGAG ACCTCAAACC TGACAACTTA TTGCTCACGG 
AGAATCACAA ATCCGTCAAG CTTGCTGATT TCGGGCTTGC TAGGGAAGAA 
TCCGTGACTG AGATGATGAC TGCTGAGACT GGGACTTACC GTTGGATGGC 
TCCTGAGCTC TACAGTACAG TGACCCTGCG TCAAGGAGAG AAGAAGCATT 
ACAACAACAA AGTTGATGTC TACAGCTTTG GAATCGTGCT TTGGGAGCTT 
CTCACTAATC GTATGCCATT CGAGGGCATG TCCAATCTGC AAGCCGCCTA 
CGCAGCAGCA TTCAAGCAGG AGAGGCCCGT AATGCCAGAG GGGATATCTC 
CGAGTCTGGC GTTCATAGTG CAGTCTTGTT GGGTGGAGGA CCCAAACATG 
AGGCCAAGCT TCAGTCAAAT TATCAGACTG CTCAATGAGT TCCTCCTTAC 
CCTGACTCCT CCGCCTCCTC AGCCTCTGCC TGAGACTGCC ACCAACAGGA 
CCAATGGCCG AGCCATCACT GAGTTCTCCA TCCGTCCAAA AGGGAAATTT 
GCCTTCATTC GCCAGCTTTT CGCTGCCAAG AGGAACATAA ACTCTTAGGT 
ACAAGAAGGG GTCTTCTTTG TCTTTGCCAC TGCCACTGCT TTGGTGGATA 
AATGACATTA GCAGAGAGAG AGAAGTAGAA AGTTAGACTT ACTTAAAGTC 
TATAGCGTAG TTAAGTACTC AATCTTCTTC TTGTCAAGTG ATTAACTGGT 
AGTATCACAC GCCAAACTAA TTGGTTAAAT GTTATAACTT AAAGCCTATG 
TTTTATCCTT TATCAATACT TGAAACAAAA CTTAGGAGAT CAACTAACTA 
TGTATATTAT CGATTATATA AGTTTTATGT TT

Gene models with high sequence identity

  1. AT5G01850.1 [+] show detail - Protein kinase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Serine/threonine-protein kinase, ATN1-like 9.5e-206
HMMPanther SERINE-THREONINE PROTEIN KINASE 9.5e-206
superfamily Protein kinase-like domain 3.2e-78
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0
HMMPfam Serine-threonine/tyrosine-protein kinase 4.7e-60
Gene3D no description 1.7e-17
Gene3D no description 1.4e-51
ProfileScan Protein kinase, catalytic domain 45.22
FPrintScan TYRKINASE 1e-09
FPrintScan TYRKINASE 1e-09
FPrintScan TYRKINASE 1e-09
FPrintScan TYRKINASE 1e-09
HMMSmart Serine/threonine-protein kinase domain 5.1e-71
HMMSmart Tyrosine-protein kinase, catalytic domain 1.2e-68

See the detailed result >

AT5G01850.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase, ATN1-like (InterPro:IPR015784); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G27560.1); Has 131148 Blast hits to 129643 proteins in 5072 species: Archae - 162; Bacteria - 15033; Metazoa - 49603; Fungi - 12189; Plants - 33321; Viruses - 522; Other Eukaryotes - 20318 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-67-A02 introduced

  • F18811 - Specific phenotypes were NOT observed.
  • F24426 - Specific phenotypes were NOT observed.
  • F29830 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found