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  3. RAFL09-67-A06

RAFL09-67-A06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08655)

full reading [+] show sequence

Nucleotide sequence: RAFL09-67-A06 - full reading 
AGACGAATGA GATCGGCAAC AAGAGCGTAA ACCCTAGCAG CAGACACAAC 
ACGAGTTCAT CGAGAAGCAA GATGACTTTC AAGCGAAGGA ACGGTGGGAG 
GAACAAGCAC AACAGAGGAC ACGTCAACCC AATCAGATGC TCCAACTGTG 
GCAAATGTTG CCCCAAGGAC AAGGCCATTA AGAGGTTCAT TGTGAGGAAC 
ATTGTGGAGC AGGCTGCTAT TAGAGATGTT CAGGAAGCTA GCGTCTATGA 
GGGATACACA TTTCCGAAGC TATATGCAAA GACGCAATAC TGTGTCTCCT 
GTGCTATCCA CTCTCATGTC GTTAGAGTCC GTTCCCGCAC CAACCGCAGG 
GTTCGTACTC CTCCACCTCG TTTCGCCAGA CGCAAGGAGG ATACTCCCAA 
GCCTGGGCAA CCAGGACAGG CACCTCGTCC TGCTGGACCT GGAGCTGCAG 
CTGCAGCTGC ACCGCGTGTC TGAAGCCTTC AAGCAGAGCT TTCTGTCTTG 
TTTTCCTATG TTCTTGTTAC GTCTTTAAGG ATGTTTGTCT CTGTTTAACA 
TAGTTTTGCC ATGTGGATCT TGAATTCTGT CAAACTATTT CAATAGTTGA 
TTCAACT

Gene models with high sequence identity

  1. AT2G40510.1 [+] show detail - Ribosomal protein S26e family protein
    E-value: 0; Score: 99.84

 

InterPro Scan Digest

Program Description E-value
HMMPfam Ribosomal protein S26e 6.5e-53
PatternScan Ribosomal protein S26e 0
HMMPanther Ribosomal protein S26e 7.1e-92

See the detailed result >

AT2G40510.1

Model type
Protein coding
Short Description
Ribosomal protein S26e family protein
Computational Description
Ribosomal protein S26e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, ribosome, chloroplast; CONTAINS InterPro DOMAIN/s: Ribosomal protein S26e (InterPro:IPR000892); BEST Arabidopsis thaliana protein match is: Ribosomal protein S26e family protein (TAIR:AT2G40590.1); Has 766 Blast hits to 766 proteins in 272 species: Archae - 53; Bacteria - 0; Metazoa - 312; Fungi - 152; Plants - 120; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-67-A06 introduced

  • F01428 - seed::increased length
  • F08527 - Specific phenotypes were NOT observed.
  • F14013 - seed::increased size / seed::increased length
  • F15503 - Specific phenotypes were NOT observed.
  • F28708 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found