1. Home
  2. Full-length cDNAs
  3. RAFL09-67-C04

RAFL09-67-C04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08659)

full reading [+] show sequence

Nucleotide sequence: RAFL09-67-C04 - full reading 
AGGTGATCGA AAGATACCAA ACTAAAGAGT TTAACTTTCT TCTTCCTTCT 
TCTTTACTTC AACATCTGAT ATTTTCTCTC TCTCTTTTAT TCAGTCTGAA 
ACAATATTTC TCGGTAGATT AAGATCTAAA GCTCGTTGAT CTAGATTCTT 
GTTTCTATTT TTGTGTGTTT TAGGCTTTGT TGGTTTTACC AAGTGTTGTG 
ATTCAGTTTG TTTTGAGGTC TGAGTCTATG GGGGAGATTG TGGTTTTAAG 
TAGTGATGAT GGTATGGAGA CTATAAAGAA CAGAGTAAAG TCATCGGAAG 
TTGTTCAGTG GGAGAAGTAT TTGCCTAAAA CTGTACTTAG GGTTTTGTTA 
GTTGAATCTG ATTACTCAAC TCGTCAAATC ATCACTGCCC TTCTTCGTAA 
ATGCTGTTAC AAAGTTGTAG CTGTTTCTGA TGGTTTAGCT GCGTGGGAGG 
TTCTAAAGGA GAAGTCACAT AACATTGATC TTATACTAAC AGAGCTGGAT 
TTGCCATCTA TATCTGGTTT TGCTCTGCTT GCTTTGGTAA TGGAGCATGA 
AGCTTGCAAG AACATTCCTG TCATAAGTAC GATGTGATGT CTTCTCAAGA 
TTCGATAAAA ATGGTGTTGA AGTGTATGCT GAGAGGTGCT GCTGATTATC 
TAATCAAACC AATGAGGAAA AACGAGTTGA AAAATCTATG GCAACATGTT 
TGGAGAAGAC TGACTGTAAA TTTTTTATTT CCTTTTTTGA GGTTTCCTTG 
TGTTGAAGTT TGAAACTTGA AAGACTTATT GTCTTTTTTG GTTATGGATC 
AGTTGCGTGA TGATCCTACT GCTCATGCTC AAAGCTTACC AGCTTCACAG 
CACAACCTTG AAGATACTGA TGAAACTTGT GAAGATTCCA GATATCATTC 
AGATCAAGGA AGTGGTGCTC AGGCTATCAA TTACAATGGT CACAATAAGC 
TGATGGAGAA TGGCAAATCA GTGGATGAAA GAGACGAGTT TAAGGAAACT 
TTTGATGTGA CAATGGATTT GATTGGTGGA ATTGACAAGC GTCCTGATAG 
TATTTATAAA GACAAGAGTC GAGATGAGTG TGTTGGTCCT GAGCTTGGAC 
TTTCTCTGAA AAGATCTTGC TCTGTAAGTT TTGAGAACCA AGATGAAAGC 
AAGCATCAAA AGCTTAGCCT CTCTGATGCG TCGGCCTTCT CAAGATTTGA 
GGAAAGCAAG TCAGCAGAAA AAGCCGTCGT TGCTTTAGAG GAGAGTACTT 
CAGGTGAGCC AAAGACACCA ACCGAATCAC ATGAAAAGTT AAGAAAAGTA 
ACATCTGATC AAGGAAGCGC CACAACGAGC AGCAACCAGG AGAATATCGG 
ATCATCAAGC GTAAGCTTCC GTAACCAAGT TCTTCAGTCC ACAGTAACGA 
ATCAGAAGCA AGATTCACCC ATACCGGTAG AATCAAATCG CGAGAAAGCA 
GCTAGCAAGG AAGTAGAAGC TGGTTCTCAA AGCACCAATG AGGGGATTGC 
TGGACAAAGC AGTAGCACAG AGAAACCAAA GGAAGAAGAA AGTGCGAAAC 
AACGTTGGAG TAGAAGCCAG AGAGAAGCTG CATTGATGAA GTTCCGGTTG 
AAGAGGAAAG ATCGATGCTT TGACAAAAAG GTTCGGTACC AGAGCAGGAA 
GAAGCTAGCA GAACAACGTC CTCGAGTGAA AGGCCAGTTC GTGCGAACCG 
TGAATTCAGA CGCGTCTACA AAATCATGAA GAGCTCTTTC AGTTTTTCCT 
CTGATTTCTT TTGTTGATTT TATAACAGAA ACTTATTTAG CTTTTGCAAT 
CTTTAGTGTG CTTTTTTTTT TTTTATGTAT TTGATTGGCT TCTTCTTCTC 
AGCTAATATG AGATACTGGG GCAACTTTTG T

Gene models with high sequence identity

  1. AT2G46790.1 [+] show detail - pseudo-response regulator 9
    E-value: 0; Score: 98.88

 

InterPro Scan Digest

Program Description E-value
HMMPfam CCT domain 7.9e-20
HMMPfam Signal transduction response regulator, receiver domain 1.4e-10
HMMPanther TWO-COMPONENT SENSOR HISTIDINE KINASE BACTERI 6.4e-07
HMMPanther SENSOR HISTIDINE KINASE-RELATED 6.4e-07
Gene3D no description 4.9e-12
superfamily CheY-like 1.9e-15
ProfileScan CCT domain 15.666
ProfileScan Signal transduction response regulator, receiver domain 19.069

See the detailed result >

AT2G46790.1

Model type
Protein coding
Short Description
pseudo-response regulator 9
Curator Summary
Pseudo-response regulator PRR9. Involved in clock function. PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR9. Interact with TOC1 in a yeast two-hybrid assay. Acts as transcriptional repressor of CCA1 and LHY.
Computational Description
pseudo-response regulator 9 (PRR9); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT2G46670.1); Has 67918 Blast hits to 66591 proteins in 3038 species: Archae - 212; Bacteria - 59069; Metazoa - 375; Fungi - 591; Plants - 3099; Viruses - 4; Other Eukaryotes - 4568 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-67-C04 introduced

  • F10518 - rosette leaf::dark green / rosette leaf::epinastic / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism / stem::abnormal / rosette leaf::epinastic / rosette leaf::abnormal / cauline leaf::epinastic
  • F15724 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found