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  3. RAFL09-67-C10

RAFL09-67-C10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09891)

full reading [+] show sequence

Nucleotide sequence: RAFL09-67-C10 - full reading 
GGAGATCACA AAGCAATCTA AAAACATTTC TCTTGATCTT TTTCCTTTAC 
CAAAAAACAA AGATCCTTTC TTCTGTTTCG TAATGATGGC TAGAAACGTT 
CTAGTAAGCG GTGGTGCTGG ATACATCGGT AGTCACACGG TGCTTCAACT 
TCTTCTCGGT GGTTACTCCG TCGTAGTTGT TGATAATCTC GATAATTCCT 
CCGCCGTCTC TCTTCAACGT GTGAAGAAAC TCGCGGCTGA ACACGGAGAA 
CGCCTCTCCT TCCACCAGGT GGATCTTCGA GACAGGTCTG CTCTTGAGAA 
GATATTCTCA GAAACAAAGT TTGATGCAGT GATACATTTT GCTGGACTTA 
AAGCAGTTGG TGAGAGTGTA GAGAAGCCTT TGCTTTATTA TAATAATAAT 
CTTGTTGGTA CTATTACTCT TTTGGAAGTT ATGGCTCAAC ATGGCTGCAA 
AAATCTTGTG TTTTCATCAT CAGCAACTGT GTATGGCTCT CCAAAAGAAG 
TTCCTTGTAC AGAGGAGTTT CCAATTTCTG CTTTGAACCC ATATGGACGA 
ACAAAGCTAT TCATTGAGGA AATCTGCCGC GATGTATACG GTTCTGACCC 
GGAATGGAAG ATTATATTGC TTAGGTATTT CAATCCTGTT GGTGCACATC 
CTAGTGGTGA CATTGGTGAA GACCCTCGTG GTATTCCAAA CAATCTCATG 
CCCTTTGTAC AACAAGTGGC TGTTGGTAGG AGACCTCATC TCACTGTCTT 
TGGAAATGAT TACAATACAA AAGATGGAAC AGGGGTTCGA GATTACATTC 
ATGTTATTGA TTTAGCTGAT GGACACATAG CGGCTCTACG TAAGCTAGAA 
GATTGCAAGA TCGGTTGTGA AGTGTACAAT CTCGGAACAG GAAATGGAAC 
ATCAGTTCTT GAAATGGTTG ATGCTTTTGA AAAAGCATCC GGAAAGAAAA 
TCCCTCTGGT GATCGCGGGA CGTCGACCGG GAGATGCTGA AGTTGTATAC 
GCCTCGACGG AAAGAGCAGA AAGTGAATTG AATTGGAAGG CCAAATATGG 
GATTGAGGAG ATGTGTAGAG ATTTGTGGAA CTGGGCTAGT AATAATCCTT 
ATGGATATGA TTCCTCTTCT GAAGACAACT CTCATTAACT TTTCTTAATC 
GTTTTCTTCT TTTGCTAAAA CATATTTCTC CACACTAAAT TATTATAGTA 
TCCGCAAGAA AAAACAACAA CAATAAAGAG TCAGATTTTA GGGAAATATA 
GGGACATTAT GTATTATTAT TACAATCAAT ACTTAGTCTG TAATTGATTT 
GGATATGTTC TTGTATAATC AAAAAAGATT TGTTATGAAT AGCTACAACG 
CAAATGTTTA GCTCTATACG GCAAAAAGTA CCTTGAGGTT GACACGACGT 
CGTTTTCAGC TCGGTGATAG TTGAAATGTA TCTTTCTGAA GCTTTTAAGT 
TCAAGAGCCC ACACACTTCT TCTCATTCTT TATAAACATA ACACTGGACA 
GTAACCAAAC TTCAGATCTG AATCAACCTC TTAAGTGGTA CAGAAGAAGA 
GAAAGGAATG ATGATTAGTG AAAGAGATGA TTTTAGTCTC ACTGGACCAT 
TACACTTAAC ATCTATAGAT TGGGCTAATG AACATCATCG ACGATCCGTA 
GCTGGATCTT TGGTTCAAGG AATCTATGTA GCTGAGCGTG ACCGTCAGCT 
ACAAAGAGAA GGTCCTGAGT TAGCTTTATC TCCAATATGG TCTGAGTTTT 
TCCATTTCCG CCTCATTCGT AAGTTTGTCG ATGACGCGGA TAACTCTATC 
TTCGGAGGAA TCTATGAGTA CAAACTGCCG CAACAGCTCT CTCAAACCGT 
CAAATCAATG GAATTTAGTC CACGTTTTGT GATTGCTTTC AGAGGAACGG 
TTACAAAAGT GGACTCCATT TCCCGTGACA TCGAGCATGA CATCCATGTT 
ATTAGAAACG GGCTTCACAC GACAACACGG TTTGAGATAG CTATCCAAGC 
AGTGAGAAAC ATTGTTGCTT CGGTTGGTGG TTCTAGTGTT TGGCTTGCTG 
GTCATTCTCT TGGTGCATCT ATGGCATTAC TTACCGGGAA AACCATCGCT 
AGAACCGGGT TTTTTCCTGA GTGTTTCGCA TTCAATCCGC CGTTTTTGTC 
TGCCCCTATC GAAAAAATTA AGGATAAGAG GATTAAACAT GGGATACGCA 
TTGCAGGCAG TGTGATCACA GCTGGACTTG CTCTAGCCAA AAAAGCCACC 
CAACACTACA GCCAAAACGA CCGTGCATTA CCCGCACCTC CTGATCCATT 
TGAAGCTTTA TCCGACTGGT TCCCGCGGCT GTATGTCAAC CCTGGTGACC 
ACTTATGCTC AGAGTATGTT GGTTACTTTG AGCACCGAAA CAAGATGGAA 
GAAATCGGGA TTGGGTTTGT AGAGCGGGTA GCGACGCAGC ACTCGTTGGG 
CGGTATGCTG TTAGGAGGAC AAGAGCCGGT ACATCTGATT CCATCTTCGG 
TTTTGACGGT GAACTTAAGC TCCTCGAGAG ATTTCAAACA AGCTCATGGG 
ATTCATCAGT GGTGGAGGGA AGATAACAAG TTTGAGACTA AAGTTTACCA 
GTACAAATGA TTTGTATCAG TTTTTTTTTA AATGGATTTA ACCGGTATTA 
GGCTTTTACT TTCCGGTTTA GACGGTTCAA TGTATCGCAA TCATAAATAA 
GTGTCTCTCT ATAGTCGGTA TATATAAACC GGAAATAGGC GTCTACGTTC 
TAATTTAGCC GGTTCAATGT GTTGTAATCT TATATATAGT CTCTTGATCA

Gene models with high sequence identity

  1. AT4G10960.1 [+] show detail - UDP-D-glucose/UDP-D-galactose 4-epimerase 5
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily alpha/beta-Hydrolases 4.6e-26
superfamily NAD(P)-binding domain 5.2e-110
HMMTigr UDP-glucose 4-epimerase 3e-185
HMMPanther UDP-glucose 4-epimerase 2.4e-201
HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 2.4e-201
FPrintScan Nucleotide sugar epimerase 2.8e-05
FPrintScan Nucleotide sugar epimerase 2.8e-05
FPrintScan Nucleotide sugar epimerase 2.8e-05
FPrintScan Nucleotide sugar epimerase 2.8e-05
HMMPfam Lipase, class 3 1.3e-06
HMMPfam NAD-dependent epimerase/dehydratase 1.7e-55
Gene3D no description 1.5e-07
Gene3D NAD(P)-binding domain 6.2e-66

See the detailed result >

AT4G10960.1

Model type
Protein coding
Short Description
UDP-D-glucose/UDP-D-galactose 4-epimerase 5
Curator Summary
Encodes a protein with UDP-D-glucose 4-epimerase activity.
Computational Description
UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (UGE5); FUNCTIONS IN: UDP-glucose 4-epimerase activity, protein dimerization activity; INVOLVED IN: response to stress; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, root, guard cell, leaf, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (TAIR:AT4G23920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-67-C10 introduced

  • F04128 - Specific phenotypes were NOT observed.
  • F08809 - Specific phenotypes were NOT observed.
  • F14931 - Specific phenotypes were NOT observed.
  • F16218 - Specific phenotypes were NOT observed.
  • F17427 - seed::increased size / seed::increased length
  • F18323 - Specific phenotypes were NOT observed.
  • F19420 - Specific phenotypes were NOT observed.
  • F29350 - Specific phenotypes were NOT observed.
  • F30531 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found