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  3. RAFL09-67-D01

RAFL09-67-D01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08662)

full reading [+] show sequence

Nucleotide sequence: RAFL09-67-D01 - full reading 
AATTCCAATG CCATCGTGAT CGATTCATCT CTCTCTCTCT CTTCCAATTT 
TCCCAATTCT TTTTTAAAAC CCTAATTTTT CAGATATCTG ATTATCTCTT 
GTATTTCTTC TACTCGATTT GCTCCCATAA AAACCCTTAC TTTCTTCAAG 
TTCTGGTTTT CACCGATTGA TGGGTCGTGG CTCAGTGACG TCGCTTGCTC 
CTGGGTTCCG TTTTCACCCG ACGGATGAGG AACTTGTTCG CTACTACCTT 
AAGCGTAAGG TCTGCAACAA ACCCTTTAAG TTCGATGCTA TTTCCGTCAC 
CGACATATAC AAGTCTGAGC CTTGGGATCT ACCAGATAAG TCGAAGCTGA 
AAAGTAGAGA CTTGGAATGG TACTTCTTTA GTATGCTGGA TAAGAAGTAC 
AGTAATGGTT CCAAGACGAA TCGTGCTACG GAGAAAGGGT ATTGGAAGAC 
GACTGGGAAA GATCGGGAGA TTCGTAATGG TTCAAGAGTC GTTGGGATGA 
AGAAGACACT TGTTTATCAC AAGGGTCGAG CTCCTCGTGG TGAAAGGACC 
AATTGGGTTA TGCATGAGTA TCGGCTTTCT GATGAGGACT TGAAGAAAGC 
TGGTGTGCCA CAAGAAGCAT ATGTGTTATG TAGGATATTC CAGAAAAGTG 
GTACGGGTCC TAAGAATGGG GAGCAGTATG GTGCTCCTTA TCTTGAGGAG 
GAGTGGGAAG AAGATGGAAT GACTTATGTA CCTGCTCAAG ATGCTTTCAG 
TGAAGGATTG GCTTTGAATG ATGATGTTTA TGTCGATATT GATGACATTG 
ACGAGAAGCC CGAAAATCTG GTGGTCTATG ATGCCGTTCC TATTCTACCT 
AACTATTGTC ATGGGGAATC AAGTAACAAT GTTGAATCAG GCAATTACTC 
AGACTCTGGA AATTACATTC AACCAGGAAA CAATGTTGTC GACTCTGGTG 
GGTACTTTGA ACAACCAATT GAAACTTTTG AGGAAGATCG GAAGCCTATT 
ATACGGGAGG GTAGCATTCA GCCTTGTTCT CTGTTTCCAG AGGAACAAAT 
TGGCTGTGGT GTGCAAGACG AAAATGTGGT GAATCTGGAA TCTTCCAACA 
ATAATGTGTT TGTAGCTGAT ACATGCTACA GTGACATTCC TATTGATCAT 
AACTATTTAC CCGATGAGCC ATTCATGGAT CCTAATAACA ATCTTCCACT 
CAACGATGGT CTGTACCTGG AAACGAATGA TCTCAGCTGT GCTCAACAAG 
ATGATTTTAA CTTCGAAGAT TATCTCAGCT TCTTTGATGA TGAGGGTTTG 
ACTTTTGACG ATTCTCTATT AATGGGACCT GAAGATTTTC TTCCCAACCA 
AGAAGCCCTT GACCAGAAAC CTGCCCCTAA AGAATTGGAG AAGGAGGTCG 
CAGGAGGCAA AGAGGCAGTG GAGGAAAAGG AAAGTGGCGA AGGATCTTCT 
TCAAAACAAG ATACAGATTT CAAGGACTTT GATTCAGCTC CGAAGTACCC 
ATTTCTCAAA AAGACGAGCC ACATGCTTGG AGCCATTCCT ACTCCATCTT 
CATTTGCTTC ACAGTTCCAA ACAAAGGACG CAATGCGTCT ACACGCAGCA 
CAATCTTCTG GTTCAGTTCA CGTGACTGCA GGTATGATGA GAATATCAAA 
CATGACTCTA GCAGCGGACA GCGGTATGGG CTGGTCATAT GACAAGAACG 
GTAACCTCAA CGTAGTCCTT TCATTCGGGG TAGTCCAACA GGATGATGCG 
ATGACTGCCT CGGGAAGCAA GACAGGAATT ACGGCGACAA GAGCTATGTT 
AGTCTTCATG TGTTTATGGG TTCTCCTACT CTCTGTTAGC TTCAAAATAG 
TAACCATGGT GTCTGCTCGG TAATAGGATC AAAGTTGAAT CGTCTCAAAG 
ACTTTTTTTG GTGTTTGTAC CTCTCCAATC ATATAGCCTT TAACTTTGGC 
AGTGCTTTGC TGCTCAATAT TTAAATTTTT ATTCGAAGGG TTTGGTGTAG 
CTTGAATTCT CTATATGGTT TCTAGTTTGA GTTTCTAGAA ATAAGAACAT 
AAACAACTTT CTTATGACAA TTATTATTTG ATCCCGTTAT TGTTGGAATC 
ATTGGTCTAA ACATGTTACA TTGTGAAATG ATATTTCGTT G

Gene models with high sequence identity

  1. AT5G04410.1 [+] show detail - NAC domain containing protein 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan No apical meristem (NAM) protein 58.576
HMMPfam No apical meristem (NAM) protein 2.6e-51
superfamily No apical meristem (NAM) protein 5e-66

See the detailed result >

AT5G04410.1

Model type
Protein coding
Short Description
NAC domain containing protein 2
Curator Summary
NAC family member, functions as a transcriptional activator, regulates flavonoid biosynthesis under high light.
Computational Description
NAC domain containing protein 2 (NAC2); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 53 (TAIR:AT3G10500.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-67-D01 introduced

  • F00403 - seed::decreased width
  • F19049 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found