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RAFL09-67-G06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08666)

full reading [+] show sequence

Nucleotide sequence: RAFL09-67-G06 - full reading 
AAAAAAGAAA CAATCTTTAG ACAAAAGAAG AGAAATTTAG TCATGGGTTA 
GTCTGCAAAA TTCAATTACG TCTTCTTCTT CTTCTTCTTC TTCATCTTTG 
ATTTGTTGGC GTGTTTAGGG TTTGGGATTT GGAGGAGAGG CAAAATGTTG 
AATTAAATAA ATCGAACGAC TCTGGATTCC TCGGCGGTTA ACGACCGCCG 
TCGCCGCCGC CGTCATAATC CAACCACCAC CACCATCAAC GACCTTGAAT 
TTCCACAATA TGCTTCATCA ATGGCACCAG ATAACGACCA TTTCTTAGAT 
TCTCCGTCGC CGCCTCTTCT AGAGATGAGA CACCACCAAT CAGCGACGGA 
GAACGGTGGT GGTTGCGGCG AGATTGTGGA GGTACAAGGA GGTCACATTG 
TTCGGTCAAC AGGAAGAAAA GACAGACATA GTAAAGTATG TACAGCGAAA 
GGACCACGTG ACCGGCGCGT GAGACTCTCA GCTCCGACGG CGATTCAATT 
CTACGATGTT CAAGATAGAC TTGGTTTTGA TCGACCAAGT AAAGCTGTTG 
ATTGGCTTAT TACTAAAGCT AAATCCGCCA TTGATGATCT TGCTCAGCTT 
CCTCCTTGGA ACCCCGCCGA TACTCTTCGT CAACACGCCG CCGCTGCTGC 
TAACGCTAAA CCCAGAAAAA CCAAAACTTT AATTTCTCCG CCACCGCCAC 
AACCGGAAGA AACAGAGCAT CATCGAATCG GAGAAGAAGA AGATAACGAA 
TCGAGTTTTC TTCCGGCGTC AATGGATTCT GATTCGATAG CTGACACTAT 
AAAGTCGTTT TTTCCGGTAG CTTCAACGCA ACAGAGCTAT CATCATCAGC 
CACCGTCACG AGGCAATACA CAGAACCAAG ATCTTCTTCG TCTCTCGCTT 
CAATCTTTCC AAAATGGTCC ACCTTTTCCT AATCAAACAG AACCTGCTCT 
GTTCTCCGGC CAGAGCAATA ATCAGTTAGC GTTTGACTCA TCGACGGCAA 
GCTGGGAACA GAGTCATCAG TCACCGGAAT TTGGAAAGAT ACAGAGACTA 
GTGTCATGGA ACAACGTCGG AGCAGCTGAA TCCGCCGGAA GTACCGGAGG 
ATTTGTGTTT GCTTCTCCGT CGTCGTTGCA TCCAGTTTAT AGCCAAAGTC 
AGCTTTTATC ACAGAGGGGT CCCCTTCAGT CCATTAACAC ACCTATGATT 
CGTGCTTGGT TTGATCCTCA CCATCATCAT CATCATCATC AGCAGTCCAT 
GACCACTGAC GATCTCCACC ATCATCATCC CTACCATATC CCTCCCGGGA 
TTCACCAATC TGCTATTCCA GGCATTGCAT TTGCTTCAAG TGGTGAATTC 
TCCGGTTTTC GTATACCAGC ACGGTTTCAA GGCGAACAAG AGGAGCACGG 
CGGCGACAAC AAGCCGTCCT CTGCTTCATC CGATTCTCGC CATTAAACAA 
GTTCCAAAAA CACATAAGAT TGTGCAACAC AACAGGTTTC TTTTCATATT 
CCAGGGCGCT TCGAATGCGT GGAATAGTGA AGGCGGTTTT CGTTGTTGTG 
TGTTTCGAAT ATCCAAATGG CCTATAAATC TGATCAACAG TTTCAGGTTC 
TTCTTAAGTC TTTAAAAGCC TAGGCCTTGG TTAATTTGAA TTCATCTTGT 
ATCAATTAGA GAACGTTCTG TAAGTTCAAT TCTGTTTTAC AATGTTTAGC 
TCTAGCTACA TGAGCTCACA TCTTGTTTGT TGTAACTTGT TCTACAATTA 
CTTGTCCTTT ATTTATGTTC TTGTGTTGGA AACCTTTAAC CCCACTTGAA 
GCTAAAGTCT TTTGTTTGCC C

Gene models with high sequence identity

  1. AT1G53230.1 [+] show detail - TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Transcription factor TCP subgroup 34.581
HMMPfam Transcription factor, TCP 1.7e-32

See the detailed result >

AT1G53230.1

Model type
Protein coding
Short Description
TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Curator Summary
Encodes a member of a recently identified plant transcription factor family that includes Teosinte branched 1, Cycloidea 1, and proliferating cell nuclear antigen (PCNA) factors, PCF1 and 2. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.
Computational Description
"TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3" (TCP3); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor 4 (TAIR:AT3G15030.3); Has 1510 Blast hits to 1508 proteins in 333 species: Archae - 0; Bacteria - 12; Metazoa - 43; Fungi - 12; Plants - 1439; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-67-G06 introduced

  • F17919 - seed::increased size / seed::increased length
  • F18202 - rosette leaf::abnormal / cauline leaf::abnormal / rosette leaf::epinastic / rosette leaf::abnormal / cauline leaf::increased size / cauline leaf::epinastic / cauline leaf::abnormal
  • F22545 - rosette leaf::abnormal
  • F28947 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found