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  3. RAFL09-67-H06

RAFL09-67-H06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08668)

full reading [+] show sequence

Nucleotide sequence: RAFL09-67-H06 - full reading 
AACCCAATAA TACCCAATAC ATAACATTTT CGGTGGAATC TTCTTTTCTC 
CACACACACC AAAGAAAAAA AAAACATCCA AAGGTTTGCA AATAAGGAAA 
AAGATGGGGT TAAATTTCAG GGAAAAGGCA TGGATACTTC TGGGGATTCT 
TTGTTGTTCA TCTTTGATTT GTTCAGTTAA AGCAATTGTC ACTTACGATC 
GTAAAGCTGT GATCATCAAT GGTCAGAGAA GGATCCTTCT CTCTGGCTCC 
ATTCACTACC CAAGAAGCAC ACCTGAGATG TGGCCTGACC TTATACAAAA 
AGCCAAAGAT GGAGGGTTGG ATGTTATACA GACTTATGTT TTCTGGAATG 
GGCATGAACC TTCTCCTGGA CAATATTATT TTGAGGACAG ATATGATCTA 
GTTAAGTTCA TCAAGGTGGT ACAACAAGCT GGTCTTTACG TTCATCTCAG 
GATTGGTCCC TATGTTTGCG CTGAATGGAA CTTTGGAGGG TTTCCTGTGT 
GGCTCAAATA TGTTCCCGGT ATGGTATTTA GGACCGACAA TGAACCTTTC 
AAGGCTGCAA TGCAAAAATT CACTGAGAAG ATTGTGAGGA TGATGAAAGA 
AGAAAAATTA TTTGAGACTC AAGGAGGACC CATCATTCTG TCACAGATAG 
AGAATGAGTA TGGACCAATA GAGTGGGAGA TAGGAGCACC AGGGAAGGCA 
TACACAAAAT GGGTAGCTGA AATGGCACAA GGACTCTCCA CTGGTGTCCC 
ATGGATTATG TGCAAGCAAG ATGATGCTCC TAACTCTATT ATAAACACAT 
GTAATGGGTT TTATTGTGAG AATTTCAAAC CAAACTCGGA CAATAAGCCG 
AAAATGTGGA CAGAGAACTG GACTGGTTGG TTTACAGAGT TTGGAGGTGC 
AGTACCATAC AGGCCAGCCG AAGACATTGC CTTATCCGTG GCTCGCTTCA 
TACAGAACGG TGGCTCTTTC ATCAACTATT ATATGTACCA TGGAGGAACC 
AACTTCGACA GAACAGCCGG TGAATTCATC GCCACCAGCT ATGACTATGA 
TGCTCCTCTT GATGAATACG GGTTACCGAG AGAACCTAAG TATAGTCACT 
TGAAAAGGCT GCATAAGGTC ATCAAGCTCT GCGAACCGGC ATTGGTCTCT 
GCTGATCCTA CAGTCACATC ACTCGGGGAT AAACAAGAAG CTCACGTGTT 
CAAGTCTAAG TCATCTTGCG CTGCTTTTCT CTCAAACTAC AACACAAGTT 
CTGCTGCAAG AGTCTTGTTT GGCGGATCTA CATATGATCT GCCTCCTTGG 
TCTGTCAGTA TTCTACCCGA CTGCAAAACT GAGTATTACA ACACTGCCAA 
GGTCCGTACA TCAAGCATAC ACATGAAGAT GGTTCCTACA AACACACCAT 
TCTCTTGGGG TTCATACAAC GAAGAGATTC CTTCTGCAAA TGACAATGGT 
ACCTTTTCAC AAGATGGGCT TGTGGAACAG ATAAGTATCA CCAGAGACAA 
GACAGACTAT TTCTGGTATC TGACAGATAT TACAATCAGT CCTGATGAAA 
AGTTCCTAAC TGGTGAAGAC CCTCTTCTTA CTATTGGGTC AGCTGGGCAT 
GCTCTTCATG TATTCGTTAA TGGCCAGCTT GCAGGAACTG CATATGGATC 
ACTGGAGAAG CCAAAGCTAA CATTTAGTCA GAAGATCAAA TTACATGCAG 
GGGTCAACAA ACTTGCTCTA TTGAGTACTG CAGCGGGTCT GCCGAACGTT 
GGCGTGCATT ATGAGACTTG GAATACTGGA GTTCTTGGCC CAGTGACACT 
GAATGGAGTT AACTCCGGAA CATGGGACAT GACTAAATGG AAATGGTCTT 
ACAAGATTGG TACTAAGGGT GAAGCTCTGA GCGTTCATAC CTTAGCCGGG 
AGTTCAACGG TAGAATGGAA AGAAGGATCA TTAGTGGCTA AAAAGCAGCC 
CTTGACCTGG TACAAGGTAA GAGAAACAGA GGAATCAATG AATCATGACC 
ACCAACAAAG TTAGATCAAT ATAATGAAAA CCGAAATCCA CAGGGCAGAA 
TTTTCACCAT CTCTTTTTGC AGTCTACTTT TGACTCACCA ACAGGCAATG 
AACCATTGGC TTTAGACATG AACACAATGG GGAAAGGTCA AATGTGGATA 
AATGGGCAGA ACATCGGACG CCACTGGCCA GCATATACAG CTCGTGGGAA 
ATGCGAACGC TGCAGCTATG CCGGGACTTT CACAGAGAAG AAATGTTTGA 
GTAACTGTGG AGAAGCTTCA CAAAGATGGT ACCATGTGCC TCGTTCATGG 
CTGAAGCCAA CTAATAACCT TGTCATTGTA CTTGAAGAAT GGGGTGGTGA 
ACCCAATGGG ATCTCTCTTG TAAAAAGAAC AGCCAAATAA TAGCTTTCTG 
ACTCCATTTT TTTCAGGATA AAATCTGTTT CTTTGTGACA AATTTAAGGC 
TCTCTGCAAG TCATTGATAG AATACAGATA TAAATGTACA TATAAACTGG 
GAATTATTGG CTCATATAGA TGAAAATTAT CTCAT

Gene models with high sequence identity

  1. AT4G26140.2 [+] show detail - beta-galactosidase 12
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Glycoside hydrolase, subgroup, catalytic core 1.6e-129
PatternScan Glycoside hydrolase, family 35, conserved site 0
FPrintScan Glycoside hydrolase, family 35 3.6e-70
FPrintScan Glycoside hydrolase, family 35 3.6e-70
FPrintScan Glycoside hydrolase, family 35 3.6e-70
FPrintScan Glycoside hydrolase, family 35 3.6e-70
FPrintScan Glycoside hydrolase, family 35 3.6e-70
FPrintScan Glycoside hydrolase, family 35 3.6e-70
FPrintScan Glycoside hydrolase, family 35 3.6e-70
FPrintScan Glycoside hydrolase, family 35 3.6e-70
FPrintScan Glycoside hydrolase, family 35 1.5e-05
FPrintScan Glycoside hydrolase, family 35 1.5e-05
HMMPanther BETA-GALACTOSIDASE 2.1e-299
HMMPanther Glycoside hydrolase, family 35 2.1e-299
HMMPanther BETA-GALACTOSIDASE 6.1e-46
HMMPanther Glycoside hydrolase, family 35 6.1e-46
superfamily Glycoside hydrolase, catalytic core 4e-86
superfamily Galactose-binding domain-like 4.5e-34
superfamily Galactose-binding domain-like 3.4e-11
HMMPfam Glycoside hydrolase, family 35 4.5e-118
HMMPfam Glycoside hydrolase family 2, carbohydrate-binding 2.4e-05

See the detailed result >

AT4G26140.2

Model type
Protein coding
Short Description
beta-galactosidase 12
Curator Summary
putative beta-galactosidase
Computational Description
beta-galactosidase 12 (BGAL12); FUNCTIONS IN: cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 2 (TAIR:AT3G52840.1); Has 2056 Blast hits to 2037 proteins in 472 species: Archae - 15; Bacteria - 846; Metazoa - 355; Fungi - 209; Plants - 564; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-67-H06 introduced

  • F18622 - Specific phenotypes were NOT observed.
  • F22247 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found