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  3. RAFL09-67-L19

RAFL09-67-L19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06594)

full reading [+] show sequence

Nucleotide sequence: RAFL09-67-L19 - full reading 
CTCTTCTTCT CTCTTCCTCA TATTTATTAC TCTCTCTTTC ACAAACACAC 
AGAAAATAAA TAAATAAAAT TAATTAATGT GAGAAAATCA ATTCAAAAAT 
TTGGACATAC GTATCATCTG AGAGAAGAAG GGTTTGGTGA ATACCGGCGG 
GTGGAACCGA CGGCGATGGC GAAGACCGGT GTTTTCGATT CGGATCCGAC 
GGCGATTGCT AAAGCCAAGG AACTGAAGCG TGAGATGAAG AAGTTGCTGA 
TTAAGATCGA TGACGAAGAT GATTTGGGTG TTCAGACGAT TGATCAGTTA 
CAGGACGCTT TGTCTGCGTT GAGAGAAGCG ACGATGAGGA AGATGGCGAA 
ATCTTCCTCG TTAGAGATGC TCGAGACTGT GTCTTGTCCT GAGGAGTTTC 
GTTGTCCTCT CTCTAATGAG CTTATGAGGG ATCCCGTCGT TTTGGCTTCT 
GACATACGAC AAGTTATTTA TCCAGAAATG GTTGAGCTCA GGGAACAGAA 
CATGTCCCAA GACTCAGCAA GTTCTGCCTC ACACGGCTTT AACACCTAAT 
CTCTTAATCC GTGAAATGAT CTCGAAATGG TGCAAGAAGA ACGGGCTTGA 
GACGAAGAGC CAATATCATC CCAACCTTGT AAATGAAGAT GAAACTGTGA 
CAAGATCAGA TCGTGAGATT TTCAATTCCT TGCTCTGTAA AGTCTCTTCT 
TCGAACCTTC AAGATCAAAA ATCAGCTGCC AAGGAGCTAA GACTTCTGAC 
CAGGAAAGGC ACTGAGTTCC GAGCTCTTTT TGGCGAATCT CCGGATGAGA 
TCACCAGGTT GGTGAATCCC TTGTTACACG GGTCAAACCC AGATGAGAAG 
CTTCAAGAAG ATGTGGTTAC AACATTGTTG AACATATCAA TACATGATGA 
CAGCAACAAG AAGCTCGTCT GCGAAAATCC TAATGTGATT CCTCTCCTTA 
TCGATGCATT GAGGCGTGGA ACAGTCGCCA CGAGAAGCAA TGCAGCTGCA 
GCGATCTTCA CTCTGTCAGC TCTCGATTCA AACAAAGTAC TTATAGGGAA 
GTCCGGAATC CTGAAACCGC TTATCGATCT CCTAGAAGAA GGGAATCCAT 
TAGCTATCAA AGACGTAGCT GCAGCGATCT TCACTCTTTG TATAGCCCAT 
GAGAACAGGA GTAGAGCTGT GAGAGACGGA GCTGTTAGGG TTTTAGGTAA 
GAAAATCTCG AATGGGTTGT ACGTTGATGA GCTTTTAGCT ATATTGGCAA 
TGCTTGTTAC TCACTGGAAG GCTGTGGAGG AATTGGGTGA GCTCGGTGGG 
GTTTCATGGT TGCTGAAGAT AACTCGAGAG AGCGAGTGCA AGCGAAACAA 
AGAGAATGCG ATAGTGATAC TGCATACTAT ATGTTTCAGC GACAGGACAA 
AGTGGAAGGA GATCAAAGAA GAGGAGAATG CTCATGGAAC GATAACAAAG 
CTTTCGCGTG AAGGAACTTC AAGGGCGCAG AGGAAAGCAA ACGGGATATT 
GGACAGACTG AGAAAAGCTA TGAATCTCAC TCATACAGCC TGAGAAAAGC 
CTTGAAATCT GCAATGTAAA TTACCTAAAA TCTTGTTTCT TTTTTTTACT 
TTATTTGGCT GTAAGAATTT TTGTAAATTA TTCATATCTT TAGGATCTGA 
ATGGTTATTG GTTTTCGTG

Gene models with high sequence identity

  1. AT3G07360.3 [+] show detail - plant U-box 9
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther VACUOLAR PROTEIN 8-RELATED 0.00021
HMMPanther BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAIN 0.00021
Coil coiled-coil 0
Gene3D no description 5.9e-12
Gene3D Armadillo-like helical 2.3e-28
HMMSmart U box domain 2.8e-07
HMMPfam U box domain 3.8e-06
HMMPfam U box domain 2.2e-08
superfamily Armadillo-type fold 1.2e-46

See the detailed result >

AT3G07360.3

Model type
Protein coding
Short Description
plant U-box 9
Curator Summary
The protein that is predicted to be encoded by this gene model lacks the U-box domain identified in the AT3G07360.1 gene model.
Computational Description
plant U-box 9 (PUB9); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-67-L19 introduced

  • F09444 - Specific phenotypes were NOT observed.
  • F15643 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found