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  3. RAFL09-67-O03

RAFL09-67-O03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08678)

full reading [+] show sequence

Nucleotide sequence: RAFL09-67-O03 - full reading 
AAATGGACCA AATTTGTGGC TACTACTCTC CTCAATTATA AAAATGAAAT 
ATTTATATAT CTTCCCTGAA CCAGGAAGAT ATTTTGTTTG TCTTCTACAA 
ATATTATATA TATGTAATTT CTTTGGATAA TTTTCTACCG CTTAAGAAGC 
ACAGATGGAC ATAATCTCAG GGCAAGCTCT GTTACTCCTC TTTTGCTTTA 
TCTTATCATG TTTTCTTATC TTCACCACCA CAAGATCTGG ACGAATCTCC 
CGCGGGGCCA CCGCGCTGCC TCCAGGACCT CCACGGTTAC CGATCATCGG 
AAATATTCAC CTCGTCGGAA AACATCCACA TCGCTCATTC GCCGAGCTCT 
CAAAAACTTA TGGACCAGTC ATGAGTCTTA AGCTTGGAAG TTTAAATACA 
GTGGTTATAG CTTCACCAGA AGCTGCGAGA GAGGTTTTAC GAACACATGA 
CCAGATTTTG TCTGCCCGTA GTCCCACTAA CGCGGTACGG TCCATCAATC 
ACCAAGACGC TTCCCTTGTC TGGCTTCCTT CGTCGTCCGC TCGTTGGAGG 
CTGTTGAGAA GGCTGTCGGT GACTCAGCTC TTGTCACCAC AGCGTATCGA 
AGCCACGAAA GCCTTGAGGA TGAACAAGGT GAAGGAACTT GTGAGCTTCA 
TAAGTGAAAG CAGCGATAGG GAAGAATCTG TTGATATTTC TCGTGTAGCC 
TTCATCACAA CTCTTAATAT CATATCGAAC ATTCTGTTTT CCGTCGATCT 
CGGTAGCTAC AACGCGAAAG CTTCTATTAA TGGGGTTCAA GACACGGTGA 
TTAGTGTTAT GGATGCTGCC GGGACTCCAG ACGCTGCTAA TTACTTTCCA 
TTTCTGAGGT TTCTTGATCT GCAAGGTAAT GTGAAGACTT TTAAGGTTTG 
CACGGAGAGG CTGGTAAGGG TTTTCCGTGG GTTCATTGAT GCTAAGATTG 
CGGAAAAATC ATCGCAGAAT AACCCTAAAG ATGTTTCAAA AAACGATTTC 
GTTGACAACC TTCTCGATTA CAAAGGAGAT GAATCAGAAC TCTCCATTAG 
CGATATTGAA CACCTTCTCT TGGATATGTT TACAGCAGGC ACGGATACAA 
GCTCTAGTAC CCTGGAGTGG GCAATGACAG AGTTACTTAA AAACCCTAAA 
ACGATGGCGA AAGCTCAGGC CGAGATCGAT TGTGTGATAG GTCAAAACGG 
TATCGTTGAA GAGTCAGATA TCTCCAAACT GCCGTATTTA CAAGCAGTCG 
TGAAGGAAAC TTTCCGGTTA CATACGCCTG TTCCGCTTCT TATCCCGCGA 
AAAGCCGAAT CCGATGCGGA GATTCTTGGT TTCATGGTGC TTAAAGATAC 
TCAGGTTCTA GTGAACGTCT GGGCCATAGG ACGAGACCCG AGCGTGTGGG 
ATAATCCGTC CCAGTTTGAG CCAGAGAGGT TTTTGGGGAA AGATATGGAC 
GTGAGAGGTA GAGATTATGA GCTTACACCA TTCGGAGCCG GACGTAGAAT 
TTGCCCGGGA ATGCCTTTGG CTATGAAAAC AGTGTCTCTT ATGCTTGCTT 
CTCTTCTTTA TTCCTTTGAC TGGAAGCTTC CGAAGGGTGT CCTTTCGGAG 
GATTTGGACA TGGACGAGAC CTTTGGTCTA ACTTTGCATA AGACCAACCC 
GTTACATGCC GTACCCGTCA AGAAACGCGC CAATATTAAT TAGTCGTGGT 
TTTATAATTA AAAATAAACA GAGAAATAAT CTCCAAAGCT TTGTTTATTA 
CCAAAAACTA TCTGTTTTCG GTTCTAGAGT TTGTTTGTTT CTCTCTCTTG 
AGGTGGCTAG AGCTTGAAGA AGTCAAAAGT ATCCATATTG ATGCCAAAT

Gene models with high sequence identity

  1. AT2G45560.1 [+] show detail - cytochrome P450, family 76, subfamily C, polypeptide 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther CYTOCHROME P450 SUBFAMILY 76C 7.5e-285
HMMPanther Cytochrome P450 7.5e-285
superfamily Cytochrome P450 4e-130
FPrintScan Cytochrome P450, E-class, group I 4.2e-53
FPrintScan Cytochrome P450, E-class, group I 4.2e-53
FPrintScan Cytochrome P450, E-class, group I 4.2e-53
FPrintScan Cytochrome P450, E-class, group I 4.2e-53
FPrintScan Cytochrome P450, E-class, group I 4.2e-53
FPrintScan Cytochrome P450, E-class, group I 4.2e-53
FPrintScan Cytochrome P450, E-class, group I 4.2e-53
FPrintScan Cytochrome P450, E-class, group I 4.2e-53
FPrintScan Cytochrome P450, E-class, group I 4.2e-53
FPrintScan Cytochrome P450, C-terminal 3e-12
FPrintScan Cytochrome P450, C-terminal 3e-12
FPrintScan Cytochrome P450, C-terminal 3e-12
FPrintScan Cytochrome P450, C-terminal 3e-12
HMMPfam Cytochrome P450 2.6e-108
PatternScan Cytochrome P450, conserved site 0
Gene3D Cytochrome P450 1.5e-125

See the detailed result >

AT2G45560.1

Model type
Protein coding
Short Description
cytochrome P450, family 76, subfamily C, polypeptide 1
Curator Summary
cytochrome P450 monooxygenase
Computational Description
"cytochrome P450, family 76, subfamily C, polypeptide 1" (CYP76C1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 76, subfamily C, polypeptide 4 (TAIR:AT2G45550.1); Has 35149 Blast hits to 34841 proteins in 1748 species: Archae - 60; Bacteria - 4538; Metazoa - 12163; Fungi - 7375; Plants - 9565; Viruses - 6; Other Eukaryotes - 1442 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-67-O03 introduced

  • F02304 - Specific phenotypes were NOT observed.
  • F02414 - Specific phenotypes were NOT observed.
  • F04009 - Specific phenotypes were NOT observed.
  • F04038 - Specific phenotypes were NOT observed.
  • F06441 - Specific phenotypes were NOT observed.
  • F11829 - Specific phenotypes were NOT observed.
  • F18234 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

11 mutant lines found