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  3. RAFL09-68-A15

RAFL09-68-A15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06605)

full reading [+] show sequence

Nucleotide sequence: RAFL09-68-A15 - full reading 
AGAACAAGTC ACTACAGATC TGAAGTGAAC CAAGCTCAGG TTTTGTCTTC 
TCTTTGATCA TTCCTTTCTC AGCAATATAA ATTAGAGTTA TATCCTTTAT 
AAAGGATTTT GCTTTTTCAC CAACAAACCC TAAATTCGGT GTCTCAGCAA 
GAATCACGTG ATTCTCGTTC CTCTTCCTCA CGAAACCCAT CATCTTCTAT 
CTCATTTGAG AAATGGGTCA AAAGTTTTGG GAGAATCAAG AAGATCGAGC 
GATGGTTGAA TCCACCATAG GCTCTGAAGC TTGCGACTTT TTCATCTCAA 
CAGCTTCAGC TTCCAACACT GCCTTGTCCA AGCTTGTCTC ACCACCAAGT 
GATTCCAATC TCCAACAAGG GTTACGTCAC GTTGTTGAAG GATCTGATTG 
GGATTATGCT CTTTTCTGGC TAGCGTCCAA CGTTAATAGC TCTGATGGTT 
GTGTCTTGAT CTGGGGAGAT GGTCATTGCC GTGTCAAAAA GGGTGCTTCA 
GGTGAGGATT ACTCTCAGCA AGATGAGATC AAAAGACGTG TGCTTCGCAA 
GCTTCACTTG TCGTTCGTTG GTTCAGATGA AGATCATCGT TTGGTGAAAT 
CAGGAGCTCT TACTGATCTC GACATGTTTT ACCTGGCTTC TTTGTACTTT 
TCCTTTAGGT GTGATACCAA TAAGTACGGT CCTGCTGGAA CCTATGTGTC 
TGGGAAGCCT CTTTGGGCTG CAGATTTGCC TAGCTGCTTG AGTTATTATA 
GGGTTAGGTC TTTCTTAGCT AGGTCAGCTG GTTTTCAGAC TGTGTTGTCT 
GTACCAGTGA ATTCTGGAGT TGTGGAGCTT GGTTCTTTAA GACATATTCC 
AGAAGATAAG AGTGTGATTG AGATGGTGAA ATCAGTGTTT GGTGGGTCTG 
ACTTTGTTCA GGCTAAAGAA GCTCCTAAAA TCTTTGGTCG ACAGCTGAGT 
CTTGGTGGAG CAAAACCTCG GTCTATGAGT ATTAATTTCT CCCCGAAGAC 
CGAGGATGAC ACGGGTTTCT CATTGGAATC GTATGAGGTG CAAGCGATCG 
GAGGCTCTAA TCAAGTGTAT GGTTATGAGC AAGGGAAAGA TGAGACATTG 
TATCTAACTG ACGAGCAAAA GCCGAGGAAG AGAGGGAGAA AACCAGCAAA 
TGGAAGAGAA GAAGCTCTAA ACCATGTGGA AGCGGAACGG CAGAGGAGGG 
AGAAGCTGAA CCAGAGATTC TACGCTTTGA GAGCGGTGGT GCCTAACATC 
TCCAAGATGG ACAAGGCTTC GCTCCTTGCA GACGCAATCA CTTACATCAC 
GGATATGCAG AAGAAAATCA GGGTGTATGA AACAGAGAAG CAGATAATGA 
AGAGGAGGGA GAGTAATCAG ATAACTCCAG CAGAGGTTGA TTATCAACAG 
AGGCATGATG ATGCAGTTGT AAGGCTAAGC TGTCCGTTGG AAACTCATCC 
AGTTTCAAAG GTGATACAAA CGTTGAGGGA GAATGAAGTT ATGCCTCATG 
ATTCCAACGT GGCCATCACA GAGGAGGGTG TGGTTCACAC ATTCACTCTC 
CGGCCTCAGG GTGGCTGCAC CGCTGAGCAG TTGAAGGACA AGCTCCTTGC 
CTCTCTATCA CAGTAACTAT CACAGCAGTA ACTGCTATGT AATAAGTGTA 
ACCGTGTTGG AGGTTGTATC AATGTACTAT TGCAAGCCAA CCAAAAAAAA 
CTCCAGCTTA GTAGGATCGT GTAATTTTCC TTATATGTAA TGTTGAGATT 
TGTCTTTTAC ATATAAAGAT TTGAGCAGAA AGCTTCAT

Gene models with high sequence identity

  1. AT4G16430.1 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

Program Description E-value
superfamily Helix-loop-helix DNA-binding 5.1e-17
HMMPanther CENTROMERE-BINDING PROTEIN 1, CBP-1 2.2e-06
HMMPanther STEROL REGULATORY ELEMENT-BINDING PROTEIN 2.2e-06
ProfileScan Helix-loop-helix DNA-binding domain 14.085
HMMPfam Helix-loop-helix DNA-binding domain 2.9e-10
HMMSmart Helix-loop-helix DNA-binding domain 1.6e-14
Gene3D Helix-loop-helix DNA-binding 3.1e-09
Coil coiled-coil 0
Coil coiled-coil 0

See the detailed result >

AT4G16430.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ABA-inducible BHLH-type transcription factor (TAIR:AT2G46510.1); Has 2977 Blast hits to 2635 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 31; Plants - 2859; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-68-A15 introduced

  • F06940 - Specific phenotypes were NOT observed.
  • F10301 - seed::increased length
  • F16542 - Specific phenotypes were NOT observed.
  • F23115 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

4 mutant lines found