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  3. RAFL09-68-B02

RAFL09-68-B02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06606)

full reading [+] show sequence

Nucleotide sequence: RAFL09-68-B02 - full reading 
AGCTTTCCAT AATTTGGAAA AAAGTGAATT GAAAAAAAGA ACAGTGACAC 
TCTTGTTTCT ATAAATTGGT GAGACCGTCC TCAAAACCCC TTCGTCACCT 
TCAGTGTCTC TCTCTCAAGA TCTAGCTCCG GTCATGAAGT CGTCGGAATT 
CCAATACCAC GAGGAATACG TGAGAAATTC AAGAGGTGTA GAGTTGTTCG 
CATGTAGATG GATCCCATCT TCTTCGTCTT CTCCCAAAGC TCTGGTTTTC 
CTCTGCCATG GTTATGGAAT GGAGTGTAGC GACTCCATGA AAGAATGCGG 
AATCAGGCTG GCTTCAGCTG GATACGCGGT TTTTGGTATG GACTATGAAG 
GTCATGGAAG GTCCATGGGA TCTCGTTGCT ACATCAAGAA GTTTGCGAAT 
GTTGTGAATG ATTGCTATGA CTACTACACA TCTATTTGTG CGCAAGAGGA 
GTACATGGAC AAAGGCAGAT TCTTGTATGG AGAATCCATG GGAGGCGCAG 
TCACTTTATT GCTTCACAAA AAAGATCCTT TGTTTTGGAA CGGCGCCATT 
CTAGTTGCTC CAATGTGTAA GATATCTGAG AAGGTGAAGC CACACCCTAT 
AGTGATTAAT CTGTTAACTA GAGTCGAAGA AATCATACCT AAATGGAAAA 
TAGTTCCAAC AAAAGACGTG ATTGACGCTG CTTTCAAGGA CCTCGTCAAG 
CGAGAAGAGG TAAGGAACAA CAAGCTGATA TATCAAGACA AGCCTAGGCT 
CAAAACCGCA CTTGAGATGC TTAGGACAAG CATGAACCTA GAAGACACTC 
TCCACGAGAT AACAATGCCA TTCTTTGTAT TACACGGAGA AGCAGATACA 
GTGACGGATC CAGAGGTAAG CAAAGCTCTG TACGAGAAAG CTAGCACAAG 
GGACAAGACG CTCAAGTTGT ATCCAGGGAT GTGGCACGCT CTGACGTCAG 
GTGAGCCTGA CTGTAACGTG GACCTTGTTT TTGCTGACAT CATCAATTGG 
CTTGACCTTC GAACCGCTGA CCCTGCCTCT CTCACTGTCA CTCCTATACG 
AGTTGGTAAC ACTACGAGCG TCCAGAGGGT AACTACTGTT AACGGCGTTA 
GTAACGGTCA TAGGAGGCCT AAACGTCCCT TCTTCAATCT CCTTTGTGGT 
TTGAACCGTG GCCGTTTGGT TCCACGATCC ACTGTGTAAT AAAATTTTAT 
CAAGGCAAAC AAAAAACAAT TTATGAAAAA GAGAGTTATG ATTTTGTGTG 
AATTAAAAAA AGG

Gene models with high sequence identity

  1. AT2G47630.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Hydrolase_4 1.5e-20
superfamily alpha/beta-Hydrolases 1e-41
Gene3D no description 1.2e-25
HMMPanther LYSOPHOSPHOLIPASE 1.8e-202
HMMPanther PHOSPHOLIPASE-RELATED 1.8e-202

See the detailed result >

AT2G47630.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G62860.1); Has 2891 Blast hits to 2889 proteins in 983 species: Archae - 32; Bacteria - 1864; Metazoa - 111; Fungi - 108; Plants - 454; Viruses - 50; Other Eukaryotes - 272 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-68-B02 introduced

  • F01622 - Specific phenotypes were NOT observed.
  • F06815 - rosette leaf::dark green / stem::abnormal / fruit::increased length / stem::present in fewer numbers in organism
  • F26028 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found