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  3. RAFL09-68-C24

RAFL09-68-C24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06609)

full reading [+] show sequence

Nucleotide sequence: RAFL09-68-C24 - full reading 
AGTCAGATAT AAATTAGGGT TTCAGATTTT TTAGATTTTA TCTCTTCAAT 
TCGAGCCAGT GAATTGCCGC CTCCTCCTCC TCCTCTTCTT CCCTCAATAC 
ATAACCAAAG CAATGAAATT CTACTTGTAT CCTGTAATGG CTGACTAAAT 
CAACTGCGAA TCGTGTTTTG TGACATGGTT ACTGTTGCTA GGCTATTGAA 
CCTCACTCTT GTTGTTCCCG AGATTGACAA AACATCCTTC TTTGCTGATT 
CAAGGTTTTG TGTTCTGTCA CCATCTCTTA GACCCCTTCT ACGTTACGCT 
TTCCTGAGAG AAGTAAAGGT CTGGTTGTGC AGTGAACATG GGGGCTCTTG 
CTCAAGTTGT TCCGTGGATA CCCGAAGACG ACCTGCTGCT AAAGAATGCT 
GTCGAGGCTG GTGCTTCTTT GGAATCGCTT GCTAAAGGTG CTGTGCAGTT 
TTCTAGAAGA TTTTCTATTA GAGAATTGCA AGATCGATGG CATGCACTGC 
TTTATGATCC AGTAGTTTCT GTAGAGGCGG CTTTTCGGAT GGCTGAGCTT 
GAACGTACTA ACCCTAATTT TCCTACTAAG TTTGGTAGAA CTGGATATTC 
AAAAGAAAAC AAAAGTTCAT CTAGGAAGAG GAATGCTGAA AGGCTCAGAA 
GTACTTATCA TTCCTTGCGG AAGAAATTTA GGACTGAGCC ATTCAATTCC 
TTGGATCTAG GTTTCCTCGT TCCACCAAAT GATAGCCATT TCATGGATAA 
TGGTGATGCA ACACATCTTG GTCTTGAGGA CTCTCACATG GATATTATCC 
ACAACGCGTT TCCAGAAATC TTGGCTGAAG GTGGTTGCGT GACAACTCAT 
GTTCTGCCAG AAGATAATTT ACAGGGAGAC ATTCCTTACG TAGAAGGAGA 
AAATCTCACA TTCACTGAAC ACGCAGGTCT ATCAGTATGT GATGTGGTTC 
ATCAAGATTC CGAGCAGAAA CTAGAGAATA CTGCTCACGA GGCAAAAAAC 
ACAATGGCTA GCACTGATTT CCTGGCACAG CTTTCAACTT CTCTTTTCGA 
AGAAGACATG GAACCGTTCA TGGAAGTAGA TGGCAAAGAA GTTGACAAGT 
CATATTATGA TGGTCTTAGC TCACTGTTGG TGAACTCTAC AAATGATACA 
AACCGCGAGG CTTTTCCTAA CCCCACCGAG CAAGAACCTT CCATTGCACC 
AACTCATCCA GGAGAGGCAA CCCTGGATGA TCATGTGATG CTTGAGCTAG 
ATGGTACAAT CGCTTTAGAT CCTCATCCTG AGATTGTTGG GGGTGTAATC 
TGCTGTTTAT TAAACGAAGA GGATCCTGAT ATTCCGTGTA ATGATGACAT 
TTTCCTGTCC AACAACTCCC GTCCGATGTC AGTTTCTTCT TTAGCCCGGC 
GGAACTTTAA GGATACCAAT AGTCCAATAA CTACATGTGT AAGAGACGTC 
TCCGCCAGTA AGGAAAAAAG TGAGGGATAT TCACTCCAGG CTCAAAAGAA 
AAAACCAGGA CGTTTACAGG GGTCTACTCA AGGAAAGCCA GAGATGGGCC 
AACCAAGTAA AGGTAGCAAA TTCAGGGCAT CGACTAGTAC TGAGTTAAAG 
AATACTGTAG CTCCTGGTGG TTCTTCCTCT GCACAGGCTT GCTCTAATAC 
TCTACTTTCT ACTGGTACCG GTGCAAAAGA TGGAAAGAAA GAAACTGCTA 
CTGGAACACT CTTTGTCGGA TCTGATGGCC ATGGCAACCA CCCAGAGAAG 
GATAGTGAAA ATTGTAAAGA GAAAAATGTT GTACCACCTG TTAATGAATC 
GCCACATGCT AAAGATACTG ATGATGGCTT GATAGAGATT ACAGTCCCTG 
AGCTGGAGAT CACCCGTGCA GAAGCAGAAG CAGAAGCAGA AGCGCATGTT 
TGTGAGAGTG ATGAGGACTT ACCCAATTAT TCTGACATTG AGGCTATGAT 
ACTTGACATG GACTTGGAAC CTGATGATCA AGATAATTTT GATCTCGAAG 
TCTCCAAGTA TCAGAGCCAA GACATGAAAA GAACAATCAT AAGACTTGAG 
CAGGCTGCTC ATTCATATAT GCAAAGAGCC ATTGCTTCCC GTGGTGCATT 
CGCTGTTTTA TATGGCAGAT ATTCAAAACA CTATATCAAG AAGCCTGAGG 
TTTTGGTGGG TAGATCAACA GAAGACCTCG CTGTGGACAT TGATTTGGGA 
AGAGAAAAGC GGGGTAGCAA AATATCTCGA CGACAGGCGA TCATACGGCT 
GGGTGATGAC GGTTCGTTTC ATATAAAAAA CCTGGGGAAG TATTCAATCT 
CAGTAAATGA GAAGGAAGTA GATCCTGGAC AGAGTTTAAT CCTCAAATCC 
GATTGTCTAG TTGAGATACG GGGAATGCCT TTTATATTTG AAACAAACCA 
AAGTTGCATG CAAGAGTACC TGAAGAGAAG AGGGAAAGTG AACTGAGACC 
AGATCAAGAG TGCGTGTTGT TTGTGTAGAT GAATGATGCA TCTCTTGTGT 
AATGTACCTT AGCCATAGGA ACACGTCTTG TAGATCTTTT AATACATCTT 
TAGTTCCGCA TCATGCATAG TTGACCCTGT TTTAAGGCGT TGAAATGAAA 
ATACAAGTCT CTTGTATCTG AATTTGTGTT TTAAGCGAAG AATGATTGTT 
CTTGTGAAAA G

Gene models with high sequence identity

  1. AT3G54350.1 [+] show detail - Forkhead-associated (FHA) domain-containing protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Forkhead-associated (FHA) domain 9.674
HMMSmart Forkhead-associated (FHA) domain 0.00041
superfamily SMAD/FHA domain 2.2e-11
HMMPfam GDP-fucose protein O-fucosyltransferase 2.3e-09
HMMPfam Forkhead-associated (FHA) domain 2.1e-07
HMMPanther MICROSPHERULE PROTEIN 1 8.9e-98

See the detailed result >

AT3G54350.1

Model type
Protein coding
Short Description
Forkhead-associated (FHA) domain-containing protein
Computational Description
embryo defective 1967 (emb1967); CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: Forkhead-associated (FHA) domain-containing protein (TAIR:AT1G75530.1); Has 387 Blast hits to 260 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 229; Fungi - 23; Plants - 94; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-68-C24 introduced

  • F01718 - Specific phenotypes were NOT observed.
  • F04835 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found