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  3. RAFL09-68-F06

RAFL09-68-F06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06614)

full reading [+] show sequence

Nucleotide sequence: RAFL09-68-F06 - full reading 
AGAATCACAC AAGCTTCACA ATGTCATCAT CATCATCAAC GACGACGAAC 
ACAACAACAG AATCAGATTC ATCATCTCTA CCTACTCACA TCGGTAGATC 
AAATTCCGAC GGAATCATCG ACACTACACC ATTTCTTCCT CCCACCGTTA 
CAAGAACCAT AAGCGTAGAT GAAGAATCCA ATCCAATTCA TCGATCCGCT 
AGACGACAAG GTCTAAGAGA AGCAGCGAGG TTCCTCCGTC ACGCTGGTAG 
CCGGAGAATG ATGCGTGAAC CATCGATGCT CGTTAGAGAA ACCGCTGCTG 
AGCAATTAGA AGAGAGACAA AGTGATTGGG CGTATTCTAA ACCTGTGGTG 
TTTCTTGACA TTTTGTGGAA TCTTGCTTTT GTTGCCATCG GTGTTGCTGT 
TCTGATACTT AGCCGTGACG AGAAGCCTAA TATGCCGTTG AGAGTTTGGG 
TTGTTGGTTA TGGGATTCAA TGTTGGTTAC ATATGGCTTG TGTTTGTGTT 
GAGTATAGGC GGAGGAGACG ACGACGTCAC CCGGAGGATG GTGGTGGTTC 
TGGGTTGACG AATTCTTCGT CGCAGCAATA TGTTTCGTTA GCGCAATTGG 
AGGATAGAGG AGAGACTAGT AATCCTGCGA AGCATCTTGA ATCAGCCAAT 
ACGATGTTCT CATTCATCTG GTGGATAATT GGATTCTACT GGGTTTCTGC 
AGGAGGCCAA ACACTATCTA GTGACTCTCC TCAGCTCTAT TGGCTGTGTA 
TCATTTTTCT CGGTTTCGAT GTTTTCTTTG TTGTGTTCTG TGTTGCATTG 
GCTTGTGTTA TCGGCCTTGC TGTTTGCTGT TGTCTTCCAT GTATAATTGC 
AATTCTATAT GCTGTTGCCG ACCAGGAGGG AGCATCGAAG AACGACATAG 
ATCAAATGCC GAAATTCAGA TTTACAAAAA CTGGCAATGT TGAAAAGCTC 
TCAGGCAAAG CACGGGGAAT AATGACGGAA TGTGGAACAG ATTCACCTAT 
TGAACGCTCG CTCTCTCCAG AAGACGCGGA ATGCTGCATC TGTCTCTGTG 
AATATGAAGA TGGAGTTGAA CTTAGAGAAC TCCCTTGTAA CCATCACTTT 
CATTGCACTT GCATCGATAA ATGGCTTCAT ATAAACTCAC GTTGCCCGCT 
CTGCAAGTTT AACATCTTGA AGAACGCAAA CAACGAAGTC TAGTAAAATC 
TGTTCTGGTT CTAGGATCAA TCCGAACGAA CCATCCCAGA CCAGAACGTT 
TCAGATATAT GTAAACTCTG GTTCGTGTTT TAGTGTTGTG CAGTTAGAAA 
CTCTAGTCCA TATCTCTTTC TCCTGATCTT CTATTACAAT GCGTCAATGC 
GCCTATTGAT AGTATGTAGG AATAAATCGT TGGATTAGTC CTACTTTATT 
TTTT

Gene models with high sequence identity

  1. AT4G11680.1 [+] show detail - Zinc finger, C3HC4 type (RING finger) family protein
    E-value: 0; Score: 99.93

 

InterPro Scan Digest

Program Description E-value
HMMPanther CLEAVAGE AND POLYADENYLATION SPECIFICITY FACT 2.6e-26
HMMPanther CLEAVAGE AND POLYADENYLATION SPECIFICITY FACT 2.6e-26
superfamily RING/U-box 1.2e-13
ProfileScan Zinc finger, RING-type 12.12
HMMSmart Zinc finger, RING-type 3.3e-05
HMMPfam Zinc finger, C3HC4 RING-type 2.4e-05
Gene3D no description 1.3e-11

See the detailed result >

AT4G11680.1

Model type
Protein coding
Short Description
Zinc finger, C3HC4 type (RING finger) family protein
Computational Description
Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G12760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-68-F06 introduced

  • F04126 - Specific phenotypes were NOT observed.
  • F13321 - Specific phenotypes were NOT observed.
  • F14815 - Specific phenotypes were NOT observed.
  • F24628 - seed::decreased width

Mutant lines with disrupted or induced

6 mutant lines found