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  3. RAFL09-68-G23

RAFL09-68-G23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06618)

full reading [+] show sequence

Nucleotide sequence: RAFL09-68-G23 - full reading 
GATGAAACTT GTCTCCTCCG GCCAACCTTA ACCCTTAAGC GAACGGTGTT 
CCTTTGCGGA TTGCGATCGT TCCGTCGATC CCTTCATCGC CCGATCTAAA 
TCTCTAATCG TGTCGGAGAT TAAAAGCAGA GGTTTTGTGG TGAATCATGT 
CTGATGTCCC TTCTTGTTCT AGCGGTAATG ATACAAACAA CAATGATTCG 
AGTAACTTCG AATGTAACAT CTGCTTAGAC TTGGCTCAAG ATCCTATTGT 
CACTCTCTGT GGTCACTTGT TCTGTTGGCC TTGTTTATAC AAATGGCTCC 
ATCTCCATTC TCAATCTAAG GACTGTCCTG TTTGCAAAGC CGTGATCGAA 
GAAGACAGAT TGGTTCCTTT GTACGGTAGA GGTAAATCGT CTGCTGACCC 
TCGGTCCAAG TCCATTCCGG GTCTCGAAGT GCCTAACCGT CCATCGGGAC 
AGAGACCCGA AACTGCACAA CCTCCTGATC CTAACCATGG TTTTGCTCAT 
CATCATGGGT TTGGAGGGTT CATGGGAGGT TTTGCTGCTC CGATGGCGAG 
TGCGCGGTTC GGGAATGTTA CATTGTCTGC AGCGTTTGGC GGTTTGATTC 
CTTCTTTGTT CAACCTCCAT TTCCATGGTT TCCCTGATGC AGCCATGTAT 
GGAGCTGCTG CTTCTGGCGG CTTCCCTCAC GGTTTCTCGA ATCCGTTTCA 
TGGAGGACAC TCGCATATGC ATAGTTACCA GCGGCACACG GGTCGACAAG 
GACAACAAGA CCATCACTTG AGGATATTGT TACTCATTGT TTTCGTCGTT 
GTTGTGTTTT CTCTCTTCTT GAGCTAGTGA GGAAATCGAT TTAGCTAACT 
GTATTTCGCT TTTTATTCTA GATTTTATTG CATAAAAACA TGGGAAAATA 
TGTGCTGTGA GTTGGCTTGT AAACTGCTAC TTTAGCAAAT TGTTCATATA 
TTAATAAAAC CTGTCGGATT CTCC

Gene models with high sequence identity

  1. AT1G19310.1 [+] show detail - RING/U-box superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 5.1e-16
HMMPanther RNF5 2.9e-70
superfamily RING/U-box 3.1e-17
HMMPfam Zinc finger, C3HC4 RING-type 4.5e-07
HMMSmart Zinc finger, RING-type 7.6e-09
ProfileScan Zinc finger, RING-type 13.478
PatternScan Zinc finger, RING-type, conserved site 0

See the detailed result >

AT1G19310.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G23780.1); Has 4673 Blast hits to 4665 proteins in 300 species: Archae - 0; Bacteria - 6; Metazoa - 2731; Fungi - 589; Plants - 822; Viruses - 25; Other Eukaryotes - 500 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-68-G23 introduced

  • F15442 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found