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  3. RAFL09-68-L04

RAFL09-68-L04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06626)

full reading [+] show sequence

Nucleotide sequence: RAFL09-68-L04 - full reading 
AGATGCTTTA AATTCTAGAA AATAATGCAA TCTCTTACCT TAACTCGGTA 
CCCAACTCCA ATTTCCCCGC CAAGACTCAA TCTTTACCCG CTAAGACAAA 
TCGCAGCTTC TGTTCTCTCT GCTCCGACCG CCGGTATTAA CCGTCGCGAT 
ATGGCGTCTC GCCATCAGTC AACTTCCTTT AAGCCCCTTG CCGTTGGTCG 
GAATTTGACC GGAGATGATG ATGATGGTTA CTGTACTCTT ATAGACTTTG 
CAGGTAGTGG AGGAGGAGAA GGGAAAAATG TAGGAGAGGA TCTTGTGGTG 
TTGCTTTACC ACTTACAACA TGCTTGCAAA AGAATCGCTT CTCTTGTCGC 
CTCTCCTTTC AATTCTTCAC TCGGAAAGCT CTCTGTTAAC TCCTCTAGTG 
GGTCAGACCG AGATGCGCCT AAGCCGCTCG ATATTGTCTC GAACGATATC 
GTCTTGTCCT CTCTTAGAAA CTCAGGGAAA GTAGCAGTAA TGGCTTCTGA 
AGAAAACGAT AGTCCAACTT GGATCAAAGA TGATGGTCCT TACGTTGTGG 
TTGTAGATCC TCTAGATGGA TCACGGAACA TCGATGCTTC GATTCCCACG 
GGAACTATAT TTGGAATTTA CAATCGTCTC GTTGAGCTTG ATCATTTACC 
TGTTGAAGAG AAAGCTGAGC TCAATTCTTT GCAGAGAGGC AGCAGGCTTG 
TAGCTTCCGG TTATGTGCTA TACTCTTCAG CCACTATCTT CTGTGTTACA 
CTTGGATCGG GAACACACGC CTTCACGCTA GACCATTCCA CAGGAGAATT 
TGTTCTTACC CATCAAAACA TCAAGATCCC AACTCGGGGA CAAATCTACT 
CAGTGAACGA TGCGAGGTAC TTTGATTGGC CAGAAGGTTT AAGGAAGTAC 
ATTGACACAG TGAGACAAGG CAAAGGTCAA AACCCGAAAA AATACTCTGC 
GCGTTATATT TGTTCTCTAG TAGCTGATCT TCACAGGACT CTCTTATACG 
GTGGAGTGGC TATGAATCCA AGAGACCATC TTCGTTTAGT CTATGAAGGT 
AACCCTTTGG CTTTTCTCGT GGAGCAAGCT GGTGGCAAAT CCTCTGATGG 
AAAAAGAGGG ATACTTTCGA TACAACCCGT GAAGCTTCAC CAAAGATTGC 
CTCTGTTTCT TGGGAGCTTA GAGGATGTTG CTGAGCTAGA GAGCTATGGA 
GATGTGCAGC AGACTGTGAA CCCTGGCTAT GAAGTTTAAA CAACTCCTCT 
GTTTCATATT ATCTGTAAAA ACAATAAATG AATCGATGTT AGATTTGGTT 
GCTTGTAACA TTATGTATTA GGAAAGTTAG ATCCGTGTAT ATATCTGTTT 
ATC

Gene models with high sequence identity

  1. AT5G64380.1 [+] show detail - Inositol monophosphatase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Fructose-1,6-bisphosphatase 7.5e-93
FPrintScan Fructose-1,6-bisphosphatase 2.6e-45
FPrintScan Fructose-1,6-bisphosphatase 2.6e-45
FPrintScan Fructose-1,6-bisphosphatase 2.6e-45
FPrintScan Fructose-1,6-bisphosphatase 2.6e-45
FPrintScan Fructose-1,6-bisphosphatase 2.6e-45
HMMPanther FRUCTOSE-1,6-BISPHOSPHATASE 6.2e-144
HMMPanther Fructose-1,6-bisphosphatase 6.2e-144
Gene3D no description 2e-46
Gene3D no description 3.3e-40
superfamily Carbohydrate phosphatase 8.5e-84
HAMAP Fructose-1,6-bisphosphatase 33.617

See the detailed result >

AT5G64380.1

Model type
Protein coding
Short Description
Inositol monophosphatase family protein
Computational Description
Inositol monophosphatase family protein; FUNCTIONS IN: phosphoric ester hydrolase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fructose-1,6-bisphosphatase (InterPro:IPR000146); BEST Arabidopsis thaliana protein match is: high cyclic electron flow 1 (TAIR:AT3G54050.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-68-L04 introduced

  • F25623 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found