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  3. RAFL09-69-D17

RAFL09-69-D17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06639)

full reading [+] show sequence

Nucleotide sequence: RAFL09-69-D17 - full reading 
GCTTGTCTCC GATGGATCCC ACCATGAATC CAACTCCAAC TCCAAGCTCC 
GCCGGCAACA GTGTCTGCAC AGATGAATTG ACCAACCTTC CCCCGGAGGA 
CTCGCCACTC GACAGCGAGA AGGATGATAG CGTTGACTTC AGCCAGGAGC 
AAGGATCGGA GTCAAATGAA GCTATTGACA CTGAGAATGG TTCAAGATCC 
GTAGACAAGA ACCAATACTC TGAAACTGAA GTTGTAGTTA GAGCAAAAGA 
TTTACAGACA GAACCTGATT CACTGGATGA TGATGTGGAG ATTGTGATCA 
AAAACCAACA TAAGTATTAC ATATACTGCC CTTGCTGTGG TGAAGATATC 
ACCAAAACAG TCAAGCTCGT GAAGATATCA GATCCCAAAC ACACAAAAGA 
CCATGACAAA GCTGTTGACA GTGACACTGA GAATGGTTCA AAATCCAAAG 
ACAAGAACAC AAAGGTTCCA TCATGGTTCT CTGATTTTAT TCAGCCGCTG 
TTTTCTTCTG AAGACAGAGG AAAGAAAGGG GTTGTTGATT CAGAGTTACT 
AGGAACTTAC GAAGATCTCG GTATCATTGG TGAGGAACCG AGCATAGATG 
TCAGTAACGA GAAAGACAGA CCGAGTTTTC CAAAGTGGTA CCTCGATGTT 
TTTGCTTGGT TATTCCTCTG TATTATTATT GCTCTTTCTG TCCTTTCGAC 
TTCTCCACCG CCTTTCATTC AACCACATCT GCAATTACCA TCTATGCCTA 
CATTGAGGAT GCCTTCTGCT TCTGTACTTT TGTTACTTCC CACATCTGCG 
GTGTTGCTTC TCTTCATTAT TTCAATGAGG TCCCGTTTCA CTCCGAGATA 
TCACAAGGAG AAAGGCGAGG TCGTTCCCAA GTCTACTGAT TCCAAGTCTC 
ACGATGACCA AGCTGCAAAT ACTGATCAAG ATTTTGACAA GAAAACAGAC 
AACAAAAGAA ATCGCCTAAC TCCTATATAC CCTTCATCAC TAGAGAAACC 
TTCCAAGCAA ACTGTCAATA AGGAAACTCA AAATCACGAT AAAGAAGCTG 
CAGATCCTGA CCAAGATGTA GACAAGGAAA CAGAGAACCA AAAAAGTCAC 
CTAACTCCGA TATATCCTTC ACCACTGGAG CAACCTTCCA AGCAAATTAT 
CAATAAGGAA ACTCAAACAG AACCTATGTT GCCACCTAAT GCTCAATCAG 
AGATCCCAAA TAGTGTTGAA CCACGCAAAG GCGGTAATAA AGTAGAAATT 
CTGAAAAGTA TTGTGTATGG AGGTCTTACA GAATCCATCA CAAGCCTATG 
CACGGTAACA TCTGCGGCAG CTTCTGGTGC TTCAACTCTG AACGTTTTAG 
CCTTGGGAGT TGCCAATTTG TCAAGCGGTC TTCTTCTGAC TGTTCACAGC 
CTCCAAGAAC TAATAAACGA GAAACCCAGA AAACAAACCA ACACTGATGA 
TTCTCCAGAA GAAGGAGAAG GAGAAGAAGA TCGATACGAG GAAGTACTCG 
GGAGAAGAGA GTATTCGAGG ATTCACAGAG TGATCGCAAT CTCTTCTTTC 
GTCATCTTCG GATTGATCCC ACCTTTAGTA TACGGTTTCT CGTTTCGAAA 
AAAGATGGAA AAGAGACAAG AGTACAAGGT TTTAGCTGTT TACGCAGTGT 
CTCTACTCTG CATCGTCTTG CTCTCAATAG CGAAAGCTTA CGTGTCGAAG 
AAACGCGATT ATGTCAAGAC TCTGTTTCGG TACACGACGA CGGCGACGAC 
GGCGTCGGGA TTCTCTCAAT TTGTGGGATA CTTGGTGAGT CAATGGCTTG 
AGAAAAGCGG GTTTTATGAT GATTCTCCAG AAACTCAACG AGTTTGAAAC 
GAGTTCTTTC GTCTTCTCTT CACTTCCCCT GTTCTTTTCG TACTCTTTAC 
GTGGCCCAAT TTATTTTCCT TAAAAGTGGT AGAATTGTTT GATTTTGACC 
CCAAGAAAAA AAACTTTTTT TGTGTGCTAC

Gene models with high sequence identity

  1. AT4G27860.1 [+] show detail - vacuolar iron transporter (VIT) family protein
    E-value: 0; Score: 99.90

 

InterPro Scan Digest

Program Description E-value
HMMPfam Protein of unknown function DUF125, transmembrane 2.3e-16
superfamily Cytokine, IL-1-like 0.00000000000062

See the detailed result >

AT4G27860.1

Model type
Protein coding
Short Description
vacuolar iron transporter (VIT) family protein
Computational Description
vacuolar iron transporter (VIT) family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217), Cytokine, IL-1-like (InterPro:IPR008996); BEST Arabidopsis thaliana protein match is: Vacuolar iron transporter (VIT) family protein (TAIR:AT4G27870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-69-D17 introduced

  • F12509 - Specific phenotypes were NOT observed.
  • F17641 - Specific phenotypes were NOT observed.
  • F22040 - rosette leaf::decreased size / rosette leaf::present in fewer numbers in organism / cauline leaf::present in fewer numbers in organism / whole plant::decreased height / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

6 mutant lines found