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  3. RAFL09-69-E12

RAFL09-69-E12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06641)

full reading [+] show sequence

Nucleotide sequence: RAFL09-69-E12 - full reading 
ATCATCAATC TTTCAATCAC AAAAAAACAA CAACACCAAA AAAAAAACGC 
ACACAATGCA GATTCACAAA CTCTGTTTTC TTGTTCTGTT CTTAGCTAAC 
GCAGCTTTTG CCGTCAAATT CAACTTCGAT TCCTTCGATG GCAGCAACTT 
GTTATTCCTA GGAGACGCAG AGCTTGGTCC TTCCTCTGAT GGTGTAAGCC 
GATCCGGAGC TTTATCCATG ACCCGAGACG AGAACCCATT CTCTCATGGT 
CAAGGTCTTT ACATCAATCA AATCCCATTC AAACCTTCAA ACACTTCTTC 
TCCTTTTTCA TTTGAAACTT CTTTCACTTT CTCCATCACT CCTCGCACCA 
AACCTAACTC CGGTCAAGGT TTCGCCTTCA TCATAACCCC GGAAGCTGAT 
AACTCCGGTG CTTCAGATGG CGGATATCTC GGAATCCTCA ACAAAACCAA 
CGATGGAAAG CCAGAGAACC ACATCTTGGC TATCGAATTC GATACTTTTC 
AGAACAAAGA GTTTCTAGAC ATTAGTGGTA ACCATGTTGG AGTTAACATC 
AACTCAATGA CTTCTCTTGT CGCTGAGAAA GCTGGTTACT GGGTTCAGAC 
AAGAGTCGGG AAAAGGAAAG TTTGGTCGTT TAAAGATGTG AATCTTAGCA 
GTGGAGAGAG GTTCAAGGCT TGGGTTGAGT TCAGAAACAA AGACTCTACG 
ATTACGGTTA CACTCGCGCC TGAAAACGTT AAGAAACCTA AGCGGGCTTT 
GATCGAAGCT CCCAGAGTGC TCAATGAAGT TCTTCTTCAA AACATGTACG 
CCGGTTTTGC TGGTTCCATG GGACGTGCCG TTGAGCGTCA CGATATTTGG 
AGCTGGTCGT TTGAAAACGC CGCCAAAAAC AACTAAACCG GTTTGGTTCT 
GTTTATAGGC TAAGTATCGT TTGTTTTGTT TTTACTTTTT TAGTAATTGC 
TGCATACTAC TCAGTGGTAA CTAGAGTGAA TAATTATGGT TTGAATAAAA 
CAAGCCAAGT GCGTGGTTTC ATTACTCCGG ATTGCCATAT TTGTATTCAG 
TCTGATTAAT TCAGATATCT CAATAAAAAG AACTTTGTTT TCATGC

Gene models with high sequence identity

  1. AT3G16530.1 [+] show detail - Legume lectin family protein
    E-value: 0; Score: 99.91

 

InterPro Scan Digest

Program Description E-value
Gene3D Concanavalin A-like lectin/glucanase, subgroup 4e-58
HMMPIR Lectin 9.4e-73
HMMPfam Legume lectin, beta chain 9.1e-74
superfamily Concanavalin A-like lectin/glucanase 3.3e-65

See the detailed result >

AT3G16530.1

Model type
Protein coding
Short Description
Legume lectin family protein
Curator Summary
Lectin like protein whose expression is induced upon treatment with chitin oligomers.
Computational Description
Legume lectin family protein; FUNCTIONS IN: carbohydrate binding, binding; INVOLVED IN: response to chitin; LOCATED IN: apoplast, cell wall, nucleus, plant-type cell wall; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Lectin (InterPro:IPR016363); BEST Arabidopsis thaliana protein match is: Legume lectin family protein (TAIR:AT3G15356.1); Has 2027 Blast hits to 2006 proteins in 125 species: Archae - 0; Bacteria - 24; Metazoa - 0; Fungi - 0; Plants - 1986; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-69-E12 introduced

  • F00801 - seed::decreased size / seed::decreased length
  • F02135 - Specific phenotypes were NOT observed.
  • F02415 - Specific phenotypes were NOT observed.
  • F09217 - seed::increased size / seed::increased length
  • F11146 - Specific phenotypes were NOT observed.
  • F13414 - seed::increased size / seed::increased length / seed::decreased width
  • F16331 - Specific phenotypes were NOT observed.
  • F18209 - rosette leaf::increased length / cauline leaf::decreased size / cauline leaf::abnormal
  • F20519 - Specific phenotypes were NOT observed.
  • F21421 - Specific phenotypes were NOT observed.
  • F24009 - Specific phenotypes were NOT observed.
  • F26305 - Specific phenotypes were NOT observed.
  • F28127 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

13 mutant lines found