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  3. RAFL09-69-F08

RAFL09-69-F08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06645)

full reading [+] show sequence

Nucleotide sequence: RAFL09-69-F08 - full reading 
GCGAAATCTC CACCAGAGTT ATGGGAATCA CCGGAAGTCT AACGCCAGAT 
CAGCTCGATT TTTTCCACTC TCAAGGGTAT TTGGTAATCG AATCGTTCGC 
GAGTGAGGAT GAGATAAGAG GCTTAAGGAA GAGGATGGAT GAGTTGCTTA 
ATCAGTTTGA TTGTTCCGTC TCCTCTATCT TCTCCACCAA AAATCAGAAG 
CACACCACAG ATAATTACTT CTTTGAGAGC GCTGAGAAAA TCTCCTTCTT 
CTTTGAAGAA AAAGCTTTTG GTGATGATGG GAAATTGAAG CAACCCAAAC 
AACTCTCTAT AAACAAAGTT GGGCATGCAC TGCATGAGCT TGACCCATTG 
TATAAGGATT TCACATATTC GTCAAAGTTT TCAAGTTTGG CATCATCCTT 
AGGTTACAGG AGACCAGTTG TCATGCAGTC TATGTATATT TTCAAGCAAC 
CTGGAATTGG AGGCGAAGTT GTGCCGCACC AAGATAATTC TTTTGTGTAC 
ACGGATCCAC AGAGTTGTAC TGGTCTCTGG ATTGCTCTTG AAGATTCTAC 
ATTAGTTAAT GGTTGTCTTT GGGCAATTCC TGGATCTCAT AAGAATGGTT 
TAGTTAGAAG GTTTATCCGT GGTGACAACG GTATAACCTT TGATCAGCCA 
TCCCCATCTT ACGAGCAGAA AGATTTTGTG TCTATTGAAA TGAAAGCAGG 
CTCATTGATT GCCATTCATG GTGATCTAAT CCATCAAAGT TTCGAGAATC 
TATCCTCGAA GTCAAGACAT GCCTATAGCT TACATGTAGT AGAATCTGAT 
GGATGTAAAT GGGCAAAAGA CAACTGGATA CAAAGAGCAA AAATGCCGGA 
GCCTCTCTAT GTTCTTCCTT GATTCAAGCC AGTCGTGGAA AAACACTGTG 
AGTTACTGTT TATCAAATTT CTTTTAAGAT CACTATCTTT GTGAGAACTA 
TGAACAGTAA TAAGAACATG GCTAAAAGGG CCTTCTTGTG TCGTTTACTT 
GTTGAAATAC AATTTGTTTC TTCTTGGCC

Gene models with high sequence identity

  1. AT2G01490.1 [+] show detail - phytanoyl-CoA dioxygenase (PhyH) family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 8.8e-133
HMMPfam Phytanoyl-CoA dioxygenase 9.2e-65

See the detailed result >

AT2G01490.1

Model type
Protein coding
Short Description
phytanoyl-CoA dioxygenase (PhyH) family protein
Computational Description
phytanoyl-CoA dioxygenase (PhyH) family protein; FUNCTIONS IN: phytanoyl-CoA dioxygenase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phytanoyl-CoA dioxygenase (InterPro:IPR008775); Has 2926 Blast hits to 2921 proteins in 334 species: Archae - 4; Bacteria - 485; Metazoa - 347; Fungi - 101; Plants - 64; Viruses - 0; Other Eukaryotes - 1925 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-69-F08 introduced

  • F03536 - Specific phenotypes were NOT observed.
  • F04613 - seed::increased size / seed::increased length
  • F06112 - Specific phenotypes were NOT observed.
  • F06236 - Specific phenotypes were NOT observed.
  • F12651 - rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::epinastic / whole plant::decreased height
  • F16834 - Specific phenotypes were NOT observed.
  • F26909 - Specific phenotypes were NOT observed.
  • F28246 - seed::increased size

Mutant lines with disrupted or induced

30 mutant lines found