1. Home
  2. Full-length cDNAs
  3. RAFL09-69-G05

RAFL09-69-G05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06652)

full reading [+] show sequence

Nucleotide sequence: RAFL09-69-G05 - full reading 
ATCAAACCAT AACTTCCAAA TCTCAACAGA ACCAAAAACA AAAGAAACCT 
ATATTAAAGA AGAAACAAAA AATGGTGGCT TTTGCAACAG AGAAGAAGCA 
AGATCTGAAT CTATTGTCTA AAATCGCCTC CGGTGACGGT CACGGCGAGA 
ATTCCTCTTA TTTCGATGGT TGGAAAGCTT ATGAAGAAAA CCCATTTCAC 
CCAATTGATA GACCTGACGG AGTTATTCAA ATGGGTCTCG CTGAAAATCA 
GCTTTGTGGA GATTTGATGC GTAAATGGGT TTTAAAACAT CCAGAAGCTT 
CGATTTGTAC ATCAGAAGGT GTGAATCAAT TCAGTGACAT TGCCATTTTT 
CAAGATTATC ATGGCTTGCC TGAATTCAGA CAAGCTGTAG CGAAATTTAT 
GGAGAAGACT AGAAATAACA AAGTTAAGTT TGATCCTGAC CGGATTGTTA 
TGAGCGGCGG CGCAACCGGA GCACACGAGA CGGTTGCTTT CTGTTTAGCT 
AATCCCGGCG ATGGTTTCTT AGTTCCAACC CCTTATTATC CAGGGTTTGA 
TAGAGATTTG AGATGGAGAA CCGGAGTGAA TCTTGTACCG GTTACTTGTC 
ATAGCTCTAA TGGGTTCAAG ATTACGGTGG AAGCCTTGGA AGCTGCTTAC 
GAAAACGCGA GAAAATCGAA TATTCCGGTT AAGGGTTTAC TTGTAACCAA 
TCCTTCAAAC CCGCTTGGTA CGACGTTAGA CCGGGAATGT TTGAAGTCTC 
TTGTTAACTT CACTAATGAC AAAGGGATTC ATCTTATTGC TGATGAGATT 
TATGCTGCTA CTACTTTTGG TCAATCCGAG TTCATAAGTG TTGCGGAAGT 
AATCGAGGAG ATCGAAGATT GTAACCGCGA TTTGATACAT ATTGTGTATA 
GTCTATCTAA AGATATGGGT CTGCCTGGTT TAAGAGTTGG TATAGTATAC 
TCTTACAATG ACAGGGTGGT TCAGATCGCA AGGAAAATGT CGAGTTTCGG 
TCTTGTTTCG TCACAAACGC AGCATTTGAT CGCTAAAATG TTATCCGATG 
AAGAGTTTGT AGACGAGTTT ATCCGCGAGA GCAAATTGCG GTTAGCTGCA 
AGGCACGCTG AGATAACCAC CGGTTTAGAT GGTTTAGGGA TTGGTTGGTT 
AAAGGCCAAA GCCGGTTTGT TCTTGTGGAT GGATTTAAGA AATCTTTTGA 
AGACAGCAAC GTTTGATTCG GAAACCGAAC TATGGCGTGT GATTGTTCAC 
CAAGTGAAGC TCAACGTGTC TCCAGGCGGT TCGTTCCATT GCCATGAACC 
GGGATGGTTT AGAGTATGTT TTGCGAATAT GGACCATAAG ACGATGGAGA 
CAGCTCTAGA GAGGATTAGA GTGTTCACTA GCCAACTTGA GGAGGAGACT 
AAACCGATGG CTGCAACAAC TATGATGGCT AAAAAGAAGA AGAAGTGTTG 
GCAGAGTAAC CTCAGGTTAA GCTTTAGTGA CACGAGGCGG TTCGATGATG 
GCTTCTTCTC GCCTCATTCG CCTGTGCCGC CTTCTCCGCT AGTCCGTGCA 
CAGACTTAAG ACCGTCTCAT ATTTTGACTA GACCAGTCGT CGTTAATTAA 
AAAGTCAATT CTTTAGATTG ATTTTGACAC ATTTATCTGA TTAAATCAAA 
TGTATAGCTA CGACTATCAA GTTGATTTTT TCTTTCTTTT AATTTTGTAT 
CTCATGTAAT TTTAACCGGG TGAATAATAT GAATTTGAAA TCAGAATTTG 
TTT

Gene models with high sequence identity

  1. AT4G11280.1 [+] show detail - 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther ACC SYNTHASE 1.1e-216
HMMPanther SUBGROUP I AMINOTRANSFERASE RELATED 1.1e-216
HMMPfam Aminotransferase, class I/II 1.3e-103
Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 4.6e-72
Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 2 2.4e-07
FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
FPrintScan 1-aminocyclopropane-1-carboxylate synthase 6e-107
PatternScan Aminotransferases, class-I, pyridoxal-phosphate-binding site 0
superfamily Pyridoxal phosphate-dependent transferase, major domain 9.4e-107

See the detailed result >

AT4G11280.1

Model type
Protein coding
Short Description
1-aminocyclopropane-1-carboxylic acid (acc) synthase 6
Curator Summary
encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family
Computational Description
1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (ACS6); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACC synthase 1 (TAIR:AT3G61510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-69-G05 introduced

  • F21301 - Specific phenotypes were NOT observed.
  • F28310 - rosette leaf::present in greater numbers in organism / cauline leaf::abnormal / whole plant::increased height / fruit::decreased length / stem::abnormal

Mutant lines with disrupted or induced

4 mutant lines found