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  3. RAFL09-69-H12

RAFL09-69-H12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06659)

full reading [+] show sequence

Nucleotide sequence: RAFL09-69-H12 - full reading 
AATTTCGTTT CTTTCCTTCT TCACTCGTTA AATTTTCGTT TAATCAGACA 
TCGATCTCAA AAGCTCTCAT CTTCAATCTC ATTGAGAATG GATCATGATC 
TCGAGATCTT CCCTTTACTC TCCTACGTCC TCCACCATTC CGATCCCGCT 
TCTCACGCGC CACCGTCTCT AGCGATTCAG CAATCTCTTG CGAATCGTTA 
TCCCCTTCTC ACCAATCCTT ATGTAATCTC CTCGTTGATT GAATCAATTC 
CCAGTACAAT CACGCAGACC CTTTTCGTAT TTGGCTCTCT TGGGCCACGA 
CCTGATCCTT TAGCTGTCTC TTCTGCTCGG TCTAAGATCC GAGAGATCAA 
AGAGAATGAT TCTTTATCGC CGGAAGATGC GGCTAAGGAA GAGCAGGTTT 
ACGCTGCGGT TGTGAGTTTA GAGGAAGTTC ATGAAGGATA TGAGAAGCAG 
TTAAGAGATT TGGAGGAGGA GATTGGTAGG GTTTATGCTT CGGCGGTTGA 
ATCATTGAGC GGTGGTGATG AAGTGAATGA GGAGGTTTTA GCGGTGATTA 
AAGACGCTGA AGATGGTGGA GTCGTTGAAA GGATTGATCT TTCTGATCAT 
GAGCTTAAGC TTCTTCCTGA TGCTTTAGGG AAAATCGTCG GTTTGGTTTC 
ACTGAATGTC TCTCGTAACA ATCTCAGGTT TCTACCTGAT ACAATCTCAG 
GACTTGAGAA ACTGGAGGAG CTAGATTTAT CTTCAAACCG TCTCGTGTTT 
CTTCCCGACT CTATTGGACT GTTACTTAAT TTGAGGATCT TAAATGTGAC 
GGGGAACAAG CTAACTTTAC TCCCAGAAAG CATTGCGCAA TGCAGGTCAC 
TGGTAGAGTT AGATGCCAGC TTCAACAACT TGACTTCTTT GCCTGCAAAC 
TTCGGATACG GATTACTCAA TCTCGAAAGG CTATCGATCC AGCTGAACAA 
AATCCGTTTC TTCCCCAATT CCATATGTGA GATGCGTTCT CTAAGGTATC 
TCGACGCACA CATGAACGAA ATCCACGGCC TTCCAATCGC TATAGGGAGA 
CTCACAAACC TTGAAGTCAT GAACTTGAGC AGCAACTTCA GCGACTTGAT 
TGAACTTCCT GACACAATCT CTGATTTAGC TAACTTGAGG GAGCTAGATC 
TCAGCAACAA CCAGATCAGA GTCTTGCCTG ACTCGTTTTT CAGGCTGGAG 
AAGCTGGAGA AACTGAACTT GGACCAGAAC CCTTTGGAGT ATCCCCCACA 
AGAGATGGTT AACCAAAGCG CTGAAGCAGT TCGAGAGTTC ATGAGGAAGA 
GGTGGGAAGA GATGGTGGAG GAAGAGCAAT TGAGGAGTGT GATTGAAGCT 
GAGAAGCAAC AAGGAGGAGC AACAGGTTGG CTCTCATGGG GGAGCTCCAT 
TGTTACTAGC CTTTTCTCTG GAGGTACTCA TGGTGGTGCA GCTAAGAAGC 
CTAAAAACTC ATTTTTGGAT GAACAGCTCT GATTTTTTTT TTTTTTTGGC 
TTTACTATAT CTAGCTAGCT TTGACGTTTT TTAGAAAAAG AAAAAAATCC 
GGAGTTTGGA CGTTTGACTT GACTGTATTT CAATGGGCCT TTAATAACCC 
TTCTGAGGCC CATCTTGGGG TTATGTTTGG GTAACATTAC T

Gene models with high sequence identity

  1. AT1G12970.1 [+] show detail - plant intracellular ras group-related LRR 3
    E-value: 0; Score: 99.88

 

InterPro Scan Digest

Program Description E-value
FPrintScan Toll-like receptor, leucine rich repeat-containing 2.2e-05
FPrintScan Toll-like receptor, leucine rich repeat-containing 2.2e-05
HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5.3e-155
HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5.3e-155
HMMPfam Leucine-rich repeat 0.018
HMMPfam Leucine-rich repeat 0.16
HMMPfam Leucine-rich repeat 0.11
HMMPfam Leucine-rich repeat 0.00065
Gene3D no description 3.4e-40
superfamily L domain-like 6.6e-50
Coil coiled-coil 0
HMMSmart no description 39
HMMSmart Leucine-rich repeat, typical subtype 24
HMMSmart no description 14
HMMSmart Leucine-rich repeat, typical subtype 0.45
HMMSmart no description 12
HMMSmart Leucine-rich repeat, typical subtype 0.75
HMMSmart no description 5
HMMSmart Leucine-rich repeat, typical subtype 34
HMMSmart Leucine-rich repeat, typical subtype 170
HMMSmart Leucine-rich repeat, typical subtype 34
HMMSmart no description 210
HMMSmart no description 4.9
HMMSmart Leucine-rich repeat, typical subtype 1.3e-05

See the detailed result >

AT1G12970.1

Model type
Protein coding
Short Description
plant intracellular ras group-related LRR 3
Curator Summary
Encodes PIRL3, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.
Computational Description
plant intracellular ras group-related LRR 3 (PIRL3); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 2 (TAIR:AT3G26500.1); Has 74858 Blast hits to 31563 proteins in 1228 species: Archae - 19; Bacteria - 7206; Metazoa - 30749; Fungi - 2417; Plants - 30057; Viruses - 17; Other Eukaryotes - 4393 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-69-H12 introduced

  • F07549 - seed::increased size / seed::increased length
  • F13812 - Specific phenotypes were NOT observed.
  • F14822 - Specific phenotypes were NOT observed.
  • F18224 - Specific phenotypes were NOT observed.
  • F18835 - seed::increased size / seed::increased length
  • F29220 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found