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  3. RAFL09-69-H18

RAFL09-69-H18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08691)

full reading [+] show sequence

Nucleotide sequence: RAFL09-69-H18 - full reading 
ATTTGCTCCT GTTAACAAAT TTGCCAACTT TCTTCCATTT TCGAATCCCT 
CTTAACGCAA AGTTAGGTTT TTTGTTAATT CATTTCATTG CTTGGATCCT 
AAGGAAAAAA AAAACAGAAA TGAAAAAACC CAAATTGTCG AAAGTGGAAA 
AAATCGACAA GATTGATCTG TTCTCTTCAC TATGGAAGCA GAGATCGGTT 
CGTGTAATAA TGGCAATAGG GTTTCTCTAT CTTGTAATTG TCTCAGTAGA 
GATACCTCTC GTTTTCAAAT CCTGGTCCAG CAGCTCCGTG CCTCTTGATG 
CTCTTTCTCG ACTCGAGAAG CTCAATAACG AGCAAGAGCC CCAAGTCGAG 
ATTATCCCTA ATCCTCCATT GGAGCCAGTT TCGTACCCGG TTTCGAACCC 
GACCATTGTT ACCCGGACGG ACCTTGTTCA GAACAAGGTC CGTGAACATC 
ATCGGGGTGT TCTCTCAAGT TTGAGATTTG ATTCGGAAAC TTTCGACCCG 
AGTAGTAAAG ACGGGTCAGT GGAGCTTCAC AAGTCAGCTA AGGAAGCTTG 
GCAGCTAGGT CGCAAGCTAT GGAAGGAGCT TGAATCTGGA AGGCTTGAGA 
AACTAGTGGA GAAGCCAGAG AAGAACAAAC CGGATTCATG TCCACATTCT 
GTTTCGCTAA CCGGGTCTGA GTTTATGAAC CGGGAGAACA AATTGATGGA 
GCTGCCGTGT GGTTTGACAT TGGGTTCACA CATAACTTTG GTGGGGAGGC 
CGAGGAAAGC TCATCCCAAG GAAGGAGATT GGTCTAAGTT GGTGTCTCAG 
TTTGTGATAG AGCTTCAAGG TTTGAAGACT GTTGAAGGAG AGGATCCTCC 
TAGGATTCTG CATTTCAATC CGAGGCTTAA GGGAGATTGG AGCAAAAAAC 
CGGTGATTGA GCAGAATAGT TGCTATAGGA TGCAATGGGG ACCTGCACAA 
CGTTGCGAAG GATGGAAGTC AAGAGATGAT GAAGAGACTG TTGATAGTCA 
TGTGAAGTGT GAAAAATGGA TTCGTGATGA TGACAATTAC TCAGAAGGGT 
CGAGGGCAAG ATGGTGGTTG AATAGACTTA TAGGAAGGAG GAAAAGGGTC 
AAAGTAGAAT GGCCGTTTCC TTTTGTGGAA GAGAAGCTGT TCGTTCTAAC 
TCTTAGCGCC GGTTTAGAGG GTTACCATAT CAATGTTGAT GGAAAGCATG 
TTACTTCTTT CCCTTATCGC ACTGGTTTCA CCCTTGAGGA TGCAACAGGG 
CTAACAGTAA ACGGAGACAT TGATGTCCAT TCTGTTTTTG TTGCCTCTCT 
GCCAACATCA CATCCTAGTT TTGCTCCCCA AAGGCATCTC GAATTGTCAA 
AGAGATGGCA GGCTCCTGTA GTTCCCGATG GGCCTGTGGA GATCTTTATA 
GGCATTCTTT CCGCAGGCAA TCATTTCTCT GAGCGGATGG CTGTGAGGAA 
ATCCTGGATG CAGCATGTTC TTATTACATC TGCAAAAGTT GTTGCTCGTT 
TCTTTGTGGC GCTGCATGGG AGGAAGGAGG TGAATGTGGA ATTGAAGAAA 
GAAGCGGAGT ATTTTGGGGA CATTGTACTT GTTCCTTACA TGGATAGCTA 
TGATCTTGTC GTGCTGAAAA CTGTTGCCAT ATGTGAACAC GGAGCTCTTG 
CATTCTCTGC AAAGTACATA ATGAAGTGTG ACGATGATAC ATTTGTAAAA 
CTTGGCGCGG TGATCAATGA AGTGAAAAAA GTACCCGAAG GTAGAAGCCT 
GTACATTGGT AACATGAATT ATTACCACAA ACCTCTCCGT GGGGGTAAAT 
GGGCAGTCAC ATATGAGGAA TGGCCAGAGG AGGACTATCC GCCCTACGCA 
AATGGACCCG GATATGTTCT ATCTTCTGAC ATTGCGCGCT TCATCGTGGA 
CAAGTTTGAG AGACATAAAT TACGGCTGTT CAAGATGGAG GACGTGAGTG 
TGGGAATGTG GGTTGAGCAT TTCAAGAACA CAACAAACCC AGTGGATTAC 
AGACACAGTC TGAGATTCTG CCAGTTTGGT TGTGTTGAGA ACTACTACAC 
AGCTCATTAC CAGTCGCCAA GACAGATGAT ATGCTTATGG GATAAGCTCT 
TAAGACAGAA CAAGCCTGAG TGTTGTAACA TGAGATGATG ATACTTGAGG 
AAACAGTTGC ATTTTCTGAG ATCTAATATG CCATCAAGCT TGCTGTAGAA 
AGCCAGGAAA ATTTTGCAAG CGTACCACAC AGAGAGAGAA AGAGAGCCAG 
GACTTGGTTC GATTGGTCTG CAGCCTTCTG ATCTGTTAAA GAAATGGAGA 
GAACATGGAG TAGGGAAGAA CACGTAGGGA ATTTACTTTA TTTTTATTTG 
TATAAACCCA TTTCTTAATC TAAATGGAAA TTTGTTTTCT C

Gene models with high sequence identity

  1. AT1G74800.1 [+] show detail - Galactosyltransferase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Concanavalin A-like lectin/glucanase 1.2e-24
HMMPanther BETA 1,3-GALACTOSYLTRANSFERASE-RELATED 4.3e-144
HMMPanther Glycosyl transferase, family 31 4.3e-144
HMMPfam Galectin, carbohydrate recognition domain 8.4e-49
HMMPfam Glycosyl transferase, family 31 1.2e-30
Gene3D Concanavalin A-like lectin/glucanase, subgroup 2.6e-06
ProfileScan Galectin, carbohydrate recognition domain 35.809

See the detailed result >

AT1G74800.1

Model type
Protein coding
Short Description
Galactosyltransferase family protein
Computational Description
Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT5G62620.1); Has 2254 Blast hits to 2220 proteins in 111 species: Archae - 0; Bacteria - 6; Metazoa - 1612; Fungi - 6; Plants - 579; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-69-H18 introduced

  • F08342 - Specific phenotypes were NOT observed.
  • F17244 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

4 mutant lines found