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  3. RAFL09-69-J08

RAFL09-69-J08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17810)

full reading [+] show sequence

Nucleotide sequence: RAFL09-69-J08 - full reading
CCCCGACGAC TACAAGCGAA CATAATGTTT AAGAAGGCGG TGGAGGCTAA 
GTCTCACCAG CGTCTCTCCG GCGCTGACCG GAAAAAACTC CGTCGCACCG
TCCGAAATAG GCTTCCCCTT CTTACCGATG AACTCCTCGA CGCAATTCTT
CCTCCCAAGG TCGAGATTAC ACTTTCCAAG TTTCAGAATC GAGTTATTGT
TTATAGTATT GAAGGTGGAT GTCCCATGTT TTTCGATATC GATGGAAGAG
GAACTGAGAT TTTCCCCACA GTTTTTGCTC TGTGGGAGGC TCCTGAAATG
TTACCTTCCT TTATGTTGAA AGGAGGTGAG GTTTCACGTT ATATTATAGG
CGGTGCAGAT TTGATGTTCC CAGGTATTTT GATCCCTCCC CAAGGCTATC
CTTCTTTCTC TGCTGGAGAA ATATGGGCTG TCAAAGTTCC TGGGAATCTA
GCACCTATTG CGGTTGGGTG TACCACAATG AGTAGTGAAG AAGCTCGTAA
AGCAGGTTTA CGTGGGAAGG CTTTAAGGAT AACTCATTAT TACCGTGACT
TCCTATGGGA ATCAGCTGAG GGGCATTATG TTCCAAATGC GGGGTTTATG
GAGGATGTGG TCATGGAGGA CCCATCGTAC CTTGCTCCTG GTTCAGGTGA
AGATATTTTA GACACTTCTG CAAGCACCGG AAATGAAGAA GATGAATCTG
CTCTGGAAAC AGCTTCAACA TCGGCTGCGG ATGCTAAGAA TGATGCTGAA
GTACATGTCG TTGGGAGCAT GAATGAGCTA TACTTGGTAG ATGATGTATG
TGCTACTGAA ACTAATACCG ACAAGCAGAT TACTCTCTCC CCTGAGGAGG
TAGATACCCT TCTTGACCAA TGTCTTTTGC AAGCATTGCA TACAACACTA
AAGGAGAAAG ACCTTCCCAT CCCAGGAAGC ACTCTATGGG CAAATCATGT
ATTACCTTGT AGGCCTTCTG GTCTCACACT TGACATTAAG AAGTCTTCCC
ATAAAAAGTT GTCAAAGTGG CTGCAATCTA AAGCGTCTGG TGGAATGATA
TCTGTTAAGG AAGACAAGCA TAAGAAGGAG ATAGTATTGA TTTCAGTCAA
CCGCAGCCAC CCAGATTACA AATCCTTCAA GCCAGAGAAA AAGAAAGCGG
AAGTCTCCGA GTCTCCTGGA GAGCGCTCCA CGGCGCAAGC TCAGTCAGAG
AAAGGGCTTG AAATTATAGA GGTCTATAAA TCAAGCATAC ACAATAGTGC
AATATTTGCA TCAGTTGGGG AAGACAAAGG AAATCTGTAC ACAGCTTCTG
AAGCCACTGA CGTTGTGTTC AAATACATTG AGAAGGAAAA TCTAGTAAAG
CCAACAAACA AATCAATGGT GGTGTTGGAT CCGATACTAT GTGATGCATT
GTTCAAAGGA GCTATCAAAA AGGGATCGGC ATATCCGTCA GAGATCCACA
AAAAGGATGT TGGGTCGACA TTTGTAGGTA GAATGCAGCC TAATCACGTA
GTGATGAGAG GAGGCGGTGA ACCCGTGGTT CGTAAAGGAG CTGTAAAGCC
GGTTCAGATA ATGACAGAAC GAAGACAAGG TAACAAAAAA GTGACCAAGG
TCACAGGGAT GGAGACGTTC TTGATAGACC CAGACTCGTT TGGATCAGAA
CTGCAGAAGA AGTTTGCTTG CAGTACTTCA GTTGGAGAAC TTCCAGGTAA
GAAAGGGTAC GAGGTTCTGA TTCAAGGAGG TGTGATTGAT AACCTTGCGA
GATATATGGT GGAACACTAT GGAGTTCCAA AGAGATACAT CGAAGTTCTT
GATAAGACTA GAAAGTGAAT GGTTTTTTCT ATTTCATTTT TTTTTTTGTG
TGTTTTAATC TTCTAATTTT ATTTGATACG TACACTCTGT GACTCTAGAG
ATGTGGAACA AATGAGAATA AAATTGTTTT GCTAAAAAAA AAA

Gene models with high sequence identity

  1. AT1G71350.1 [+] show detail - eukaryotic translation initiation factor SUI1 family protein
    E-value: 0; Score: 99.90

 

InterPro Scan Digest

Program Description E-value
HMMPfam Translation initiation factor SUI1 4e-17
HMMPfam Pseudouridine synthase/archaeosine transglycosylase 0.000011
HMMPfam SWIB/MDM2 domain 0.00021
HMMPanther LIGATIN 6.7e-235
HMMPanther LIGATIN 6.7e-235
Gene3D no description 0.0000011
HMMTigr Uncharacterised domain 2 0.000000021
superfamily Translation initiation factor SUI1 2e-28
superfamily SWIB/MDM2 domain 5e-18
superfamily Pseudouridine synthase/archaeosine transglycosylase-like 0.00000000000046
ProfileScan Translation initiation factor SUI1 18.606
ProfileScan Pseudouridine synthase/archaeosine transglycosylase 13.927

See the detailed result >

AT1G71350.1

Model type
Protein coding
Short Description
eukaryotic translation initiation factor SUI1 family protein
Computational Description
eukaryotic translation initiation factor SUI1 family protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Translation initiation factor SUI1 (InterPro:IPR001950), SWIB/MDM2 domain (InterPro:IPR003121), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (TAIR:AT1G09150.1); Has 1013 Blast hits to 993 proteins in 255 species: Archae - 62; Bacteria - 0; Metazoa - 354; Fungi - 333; Plants - 100; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-69-J08 introduced

  • F04415 - Specific phenotypes were NOT observed.
  • F15827 - Specific phenotypes were NOT observed.
  • F23428 - Specific phenotypes were NOT observed.
  • F26443 - seed::decreased size
  • F28401 - Specific phenotypes were NOT observed.
  • F29047 - rosette leaf::dark green / rosette leaf::abnormal / stem::decreased thickness / stem::abnormal / stem::abnormal

Mutant lines with disrupted or induced

7 mutant lines found