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  3. RAFL09-69-M02

RAFL09-69-M02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06672)

full reading [+] show sequence

Nucleotide sequence: RAFL09-69-M02 - full reading 
CTATCTCTGA GGTCCAAACT CTTCGGTGGA GGAGAAGAAC TGAAACGGAA 
ATGAGATCCC CTAGAACCTT GGAGGTTTGG AAGCTAGGCA CTGTCAACTA 
TTTGAAATCC CTTAAACTGC AGGAGAAATT AGTTTCAGAG AGAAAAGCTC 
ATCAGATTCC AGATACCCTC CTCTCGCTTC AGCATCCACC AACTTATACG 
CTCGGAAAGC GTAGAACCGA TCACAATCTA CTTATCCCTG AATCTGAACT 
TACAAAAATC GGAGCTGAAC TTCATTATAC TCAAAGAGGA GGAGACATCA 
CCTTCCATGG CCCTCATCAA GCCATCTTAT ATCCCATCAT TTCCTTACGC 
AGCATTGGTT TTGGTGCTAG GAACTACGTG GAGACATTGG AGCGGTCAAT 
GATCGAGTTT GCTTCGATTT ATGGCGTGAA AGCTCGAGCA GGAAACAAAT 
GTGAGACTGG GGTTTGGGTT GGGGATAGGA AGATCGGTGC TATTGGGGTT 
AGGATATCTT CTGGAATCAC TAGTCATGGT TTGGCCTTAA ATATAGATCC 
TGATATGAAG TACTTTGAGC ACATTGTGCC TTGTGGGATT GCTGATAAAG 
AAGTTACATC TTTGCGAAGA GAGACGGATA CTCTGCTTCC TTCAGAAGAA 
GTGATTCATG AACAGTTGGT TTCTTGTTTA GCCAAAGCGT TTTCTTATGA 
TGATGTTGTC TGGAAGGAAG ATCCTTCACT CATTTTGGAC ACCCAAGATA 
AAGAATAATC CGGTTTGATC CGGTTTTGAT TTATTGTCTA CAAAAAATGT 
TATTATTTTT TGACGTGATG TGGATTTCTG ATATTGTCTT ATTCATTCTC 
AAATTTTCAT TAAAACC

Gene models with high sequence identity

  1. AT1G04640.1 [+] show detail - lipoyltransferase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Octanoyltransferase 1.7e-34
BlastProDom LIPB_ARATH_Q9SXP7; 6e-22
HMMPanther LIPOATE-PROTEIN LIGASE B 3.2e-68
PatternScan Octanoyltransferase, conserved site 0
HMMPfam Biotin/lipoate A/B protein ligase 6.2e-13
HAMAP Octanoyltransferase 30.027

See the detailed result >

AT1G04640.1

Model type
Protein coding
Short Description
lipoyltransferase 2
Curator Summary
Lipoyltransferase, located in mitochondria but not found in chloroplasts
Computational Description
lipoyltransferase 2 (LIP2); CONTAINS InterPro DOMAIN/s: Octanoyltransferase (InterPro:IPR000544), Octanoyltransferase, conserved site (InterPro:IPR020605), Biotin/lipoate A/B protein ligase (InterPro:IPR004143); BEST Arabidopsis thaliana protein match is: Biotin/lipoate A/B protein ligase family (TAIR:AT4G31050.1); Has 5700 Blast hits to 5697 proteins in 1675 species: Archae - 17; Bacteria - 3180; Metazoa - 102; Fungi - 137; Plants - 98; Viruses - 0; Other Eukaryotes - 2166 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-69-M02 introduced

  • F07639 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found