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  3. RAFL09-69-M10

RAFL09-69-M10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06673)

full reading [+] show sequence

Nucleotide sequence: RAFL09-69-M10 - full reading 
ACTTCCGTCA GCTATAGCTT TGGAGAAACT GCATCAATGG CGTTGAGATT 
GACATCGCTA AAACGCGCCG CGGTTGAGTC CTGTCGCATT TTGGAAACCC 
GAAGCTTAAG TCATGTCGCT GCGATGCCTT CCCCCTTGAA CGGAGCTTTT 
GATCGCCCGA TTTCTATGCC GCCGCTGGTT TTACCTGAGT TCGATCAGAA 
TCAACCGGGT TTGATCGAAG AAAAGAGCTT CGGGTTCGGG CTTCCTAGTT 
TTGCTTTTAA TGGATCCATG GAGCTAATGG CTGTGCCTAA GAAGAAGATT 
TCTAAACACA AGAGAGGGAT AAGAAATGGT CCAAAGGCTC TTAAGCCTGT 
TCCTGTGATC ATCCGTTGCA GGAGTTGCGG GCGAGTCAAG CTGCCACATT 
TCTTCTGTTG CAGCGGTGAG CGGCTAAACC CTACTGAGTA AGGCAATTCG 
AACAACTGGT CATGGTTTCC AATATGATTA CTCCTTGTTG GATATCAAGA 
GGATAAAATC TTGGCTTTCT TAGTAGTACA CTAGAATGAT AAAAGACTTA 
GTTGATGCTG TTTTGGCAAA TTATTGTATG CTGCAAGATC AATATTCTCA 
TGCTTCTCTT GACAAATTAT GTTATTGTCA TTGCTTGTTG CAAAGTGTAG 
GATTATCTCA TTCACTTTTA TTTGTGCTCT TAGATTTGGA TTCAACAGCT 
AAATATATTC GAAATGGATA AATATATTCA C

Gene models with high sequence identity

  1. AT1G26740.1 [+] show detail - Ribosomal L32p protein family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Ribosomal protein L32p 0.00062
HAMAP Ribosomal protein L32p 10.931
HMMPfam Ribosomal protein L32p 2.2e-10

See the detailed result >

AT1G26740.1

Model type
Protein coding
Short Description
Ribosomal L32p protein family
Computational Description
Ribosomal L32p protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L32p (InterPro:IPR002677); BEST Arabidopsis thaliana protein match is: Ribosomal L32p protein family (TAIR:AT1G69485.1); Has 123 Blast hits to 123 proteins in 51 species: Archae - 0; Bacteria - 41; Metazoa - 0; Fungi - 21; Plants - 49; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-69-M10 introduced

  • F00338 - Specific phenotypes were NOT observed.
  • F02230 - Specific phenotypes were NOT observed.
  • F13410 - Specific phenotypes were NOT observed.
  • F20021 - Specific phenotypes were NOT observed.
  • F20338 - seed::increased size
  • F25418 - Specific phenotypes were NOT observed.
  • F30030 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found