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  3. RAFL09-69-N14

RAFL09-69-N14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08696)

full reading [+] show sequence

Nucleotide sequence: RAFL09-69-N14 - full reading 
ATCGCTGTCT TCAGTCTCGC TTCTTTGTAA ACTGTAAAGG ATCAAGCTTT 
TCTATTCAGA TCAAATCCAC TTCACTATAC CCTTTTTTAG TTTCGTTAAC 
CCAGCTCAAA TCCGAGATGA GATATCAACA ATGGCGATTG ATGCTTCTTC 
GAAGCTACCA TCGTTCTCAT CTTCCTTATC TATCTCCTTG TTCTCAGGTA 
ACCTCCATTT CATCGCGATC TTTCTCTTCT TTCATTCACC CTGGGATCGG 
AGCTTTGCAA CAAAGTGAAC AACTTTGTCC CTTACGATCC CCAATGACGA 
GCTCTGGCAA CTTAGTGAAA TCAGTGGGTC GAAGCTTCTC GTCCGAGCCT 
GCGGTTGAAG AGAAATCTTC TGCTGAGGCT ACCGTGATTG ATATTTTTAG 
TAGATTGAGT GGTGAGGATG AGATTAGGAA GGAGTTGGAA TCGAGTGGTG 
TAGTGATTAG CCAAGATTTA GCTTTGAAGG TTTTGAGAAA GCTCGAATCA 
AACCCTGATG TTGCCAAAAG TTTTTTCCAG TGGATTAAGG AGGCTTCTCC 
TGAGGAACTT AGCTCGAAGA ACTATAACAT GATGCTGCGG ATTCTGGGTG 
GTAATGGACT TGTTGATGAG TTTTGGGGGT TGGTTGATGT GATGAAGAAG 
AAAGGGCATG GTTTATCGGC TAATGTTAGA GATAAAGTGG GTGACAAATT 
TCAGAAAGAT GGGCTGGAGA GTGATTTGCT GAGGCTGAGA AAGCTTTTTA 
CTTCAGATTG TTTAGATAAT TCGGCGGAGA ATGTTTGCGA TAGGGTGTGT 
AAGATTGTGA TGAAGGAAGA ATGGGGTGAT GATGTAGAGA AACGGGTAAG 
AGATTTGAAT GTTGAGTTTA AGAGTGATTT AGTGAAGATG ATTGTGGAAC 
GTCTTGATGT TGAACCCAGG AAAGCTTTGT TGTTCTTCCG GTGGATTGAT 
GAGTCTGATC TCTTTAAGCA TGATGAGAAA ACCTATAATG CTATGGCTAG 
GGTTTTGGGA AAAGAGAAGT TTCTTGATAG ATTTCAGAAC ATTGTAGTAG 
AAATGAGGAG TGCTGGTTAT GAAGTGGAAA TAGAGACTTA TGTTAGAGTT 
TCAACGAGGT TCTGCCAGAC TAAATTGATC AAGGAAGCTG TTGACTTGTT 
TGAGATTGCA ATGGCAGGTA GTAGTAGTAG TAACAACCCC ACCCCACACT 
GCTTCTGTTT GTTGCTCAAG AAAATTGTCA CTGCCAAGAT TCTAGATATG 
GATTTGTTTT CAAGAGCTGT GAAAGTTTAT ACCAAAAATG GTAATGCTTT 
GACGGATTCC TTGCTGAAAT CTGTCTTAAA GTCCTTGAGA AGCGTGGATA 
GGGTTGAACA GAGCAATGAG CTGTTGAAAG AAATGAAGAG AGGAGGCTAT 
GTTCCTAGTG GTGATATGCA GAGCATGATT GCATCAAGTC TTAGTCGTAA 
GGGAAAGAAG GACGAAGCTG ATGAATTTGT AGACTTTATG GAATCATCCG 
GAAACAATCT AGATGACAAG GCAATGGCGT CTCTTGTTGA AGGGTATTGT 
GATTCCGGGA ATCTTGATGA AGCTTTAGTG TGTTTCGAGA AAATGGTTGG 
AAACACGGGA GTCTCCTATG CTGATTATTC ATTTGAGAAG TTGGTTCTTG 
CTTATTGCAA CAAGAATCAA GTAAGAGATG CATACAAGCT TTTGAGTGCA 
CAAGTAACGA AAAATCAACT GAAACCTCGT CATAGCACAT ACAAAAGCTT 
GGTGACGAAT CTGTTGACGA AGAAGATTGC AAGGGATGGT GGGTTTGAAG 
AAGCTTTGAG TCTTCTACCG ATAATGAAAG ATCACGGGTT CCCTCCTTTC 
ATTGACCCTT TCATGAGTTA CTTCTCATCA ACTGGAAAAA GCACTGAAGC 
TCTCGGTTTT TTGAAGGCTA TGACCTCGAA TAACTTTCCA TATATATCAG 
TGGTTCTGCG TGTATTCGAA ACTATGATGA AGTCTGCAAG ACACAGTGAA 
GCACAAGATT TACTCTCTCT GTGCCCAAAC TATATCCGTA ATAATCCGGA 
TGTTCTAGAA CTCTTCAATA CCATGAAACC CAACGAATCT GCTGTAGAAA 
AACCTTTGGC TGCTTCTGCT TAGCTCCAGT TTTAGTTTAC ATTCCTTCAA 
GTCTTTTTGG TTTCTGGGCA TTTGATTCAA ATAATTTGGC CAGAATATTT 
CCTGCTGTTC CCTTTTGTTT ACATGTATCA CTCACCAGTC ACCAGTTAAC 
TTTCTTCATC AACCTGGTGC ACTGGCAAAA TAATTTTAAG GTACTATGTT 
TTTTATATTC CACTTGCTTA TCATCTG

Gene models with high sequence identity

  1. AT5G15980.1 [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

Program Description E-value
HMMPfam Pentatricopeptide repeat 0.079
HMMPfam Pentatricopeptide repeat 0.00061
HMMTigr Pentatricopeptide repeat 0.00092
HMMTigr Pentatricopeptide repeat 0.05
HMMTigr Pentatricopeptide repeat 0.11
HMMTigr Pentatricopeptide repeat 0.31
HMMTigr Pentatricopeptide repeat 0.092
superfamily TPR-like 3.8e-06
HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1.4e-58
ProfileScan Pentatricopeptide repeat 8.473
ProfileScan Pentatricopeptide repeat 8.813
ProfileScan Pentatricopeptide repeat 5.536
ProfileScan Pentatricopeptide repeat 7.947
ProfileScan Pentatricopeptide repeat 8.835
ProfileScan Pentatricopeptide repeat 6.697
ProfileScan Pentatricopeptide repeat 7.443
ProfileScan Pentatricopeptide repeat 8.177

See the detailed result >

AT5G15980.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G02490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-69-N14 introduced

  • F01941 - Specific phenotypes were NOT observed.
  • F06225 - Specific phenotypes were NOT observed.
  • F10348 - Specific phenotypes were NOT observed.
  • F16709 - Specific phenotypes were NOT observed.
  • F19518 - Specific phenotypes were NOT observed.
  • F21830 - Specific phenotypes were NOT observed.
  • F23411 - rosette leaf::abnormal / cauline leaf::decreased size / stem::decreased thickness

Mutant lines with disrupted or induced

7 mutant lines found