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  3. RAFL09-70-E12

RAFL09-70-E12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08700)

full reading [+] show sequence

Nucleotide sequence: RAFL09-70-E12 - full reading 
ATTCTTCACT AAATGTTTGA GATCTATCCG TCACACTCCA GAGGTTAAAC 
TCAGTCATCT GTCTTTGGGG AGGACAAGCA AGAACCTCAC CGACGATTCC 
ATACCAAACA AATTCCCGAT CTGGAAACAA CTGACCTGTG AAGGTGAAGT 
GTATCGCTGG AAATGGCGGT GGCCTTCCGT GGAGGCCGGG GAGGCGTCGG 
ATCCGGCCAA TCTACCGGAC TTCGTAGTTT CTTCTCCTAC CGGATCTTTA 
TCTCCGCTTT GTTCTCTTTT CTCTTCCTCG CCACTTTCTC CGTCGTTCTT 
AACTCCTCTC GTCATCAGCC TCATCAGGAT CATACATTGC CGAGTATGGG 
CAACGCATAT ATGCAGAGGA CGTTTTTGGC TTTGCAATCG GATCCATTGA 
AAACTAGGTT GGATCTGATA CACAAGCAAG CCATTGATCA TTTGACACTG 
GTGAATGCGT ATGCTGCTTA CGCTAGGAAG CTAAAGCTTG ATGCTTCTAA 
GCAGCTTAAG CTCTTCGAAG ATTTGGCTAT CAACTTCTCG GATTTGCAGT 
CAAAACCTGG TTTGAAATCT GCTGTGTCTG ATAATGGTAA TGCTCTTGAG 
GAGGATTCGT TTAGGCAGCT TGAGAAAGAA GTGAAGGATA AGGTGAAGAC 
AGCGAGGATG ATGATCGTTG AGTCTAAAGA GAGTTATGAT ACACAGCTTA 
AAATCCAGAA GTTGAAAGAT ACAATCTTTG CTGTCCAAGA ACAGTTGACA 
AAGGCTAAGA AAAACGGTGC GGTTGCTAGC TTGATTTCAG CCAAGTCGGT 
TCCTAAAAGT CTTCATTGTT TGGCCATGAG GCTTGTAGGA GAGAGGATCT 
CTAATCCTGA GAAGTACAAG GATGCTCCAC CTGACCCAGC CGCAGAGGAT 
CCAACTCTTT ACCACTATGC GATTTTCTCT GATAATGTCA TTGCTGTGTC 
TGTTGTGGTG AGATCGGTTG TGATGAACGC TGAGGAGCCA TGGAAGCATG 
TCTTCCATGT GGTGACAGAT CGGATGAATC TCGCAGCCAT GAAGGTGTGG 
TTTAAGATGC GTCCTTTGGA CCGTGGTGCC CATGTTGAGA TTAAATCCGT 
GGAGGATTTC AAGTTCTTAA ACTCTTCCTA TGCGCCGGTC TTGAGGCAGC 
TTGAGTCTGC CAAGTTGCAG AAGTTTTACT TTGAGAATCA AGCTGAGAAC 
GCAACTAAAG ATTCACATAA CCTCAAGTTC AAGAACCCCA AGTATCTCTC 
GATGTTGAAC CATCTCAGAT TTTACTTACC AGAGATGTAT CCGAAGCTGA 
ATAAGATTTT GTTCTTGGAC GATGATGTTG TGGTGCAGAA AGACGTGACT 
GGTTTATGGA AAATCAACTT GGATGGCAAG GTGAATGGAG CCGTTGAGAC 
ATGTTTTGGT TCTTTTCATC GATATGGTCA ATACTTAAAC TTCTCTCATC 
CTTTGATCAA AGAGAACTTT AACCCCAGTG CCTGTGCTTG GGCCTTTGGA 
ATGAACATAT TCGATCTCAA TGCCTGGAGA CGCGAGAAGT GCACCGATCA 
ATACCATTAC TGGCAGAACC TGAATGAAGA CAGAACTCTC TGGAAATTGG 
GAACTCTACC TCCGGGATTG ATCACATTCT ATTCAAAGAC GAAATCATTG 
GACAAATCAT GGCATGTACT TGGGTTAGGC TATAACCCGG GAGTGAGCAT 
GGACGAAATC AGAAATGCAG GAGTGATTCA TTACAATGGA AACATGAAAC 
CGTGGCTAGA CATTGCGATG AACCAATACA AGTCTCTCTG GACTAAATAT 
GTTGATAACG AAATGGAGTT TGTGCAGATG TGCAATTTTG GTCTCTAAAG 
AGAGAACGAT GAAAACAAAC AAACCGGAAA GAGGAAAAAA TAGGGAGAAG 
AGGTAACCTC GGATCGATGT GTTTCTGTCT TTCTCGGCAT TCTTTAACTG 
ATGATACGTT TATCTTTATA TAGGGTTACA AAAAAAAAGA AGCATTTTGC 
TTGTTATTTC TGTCATAGTT TTGGTCTTTA TTTTTATTTT GTAAACTCTT 
CACAGCAATA TGTTCTCCCA AGCTACAATG TCTTGTTGTC TCT

Gene models with high sequence identity

  1. AT3G02350.1 [+] show detail - galacturonosyltransferase 9
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
Gene3D no description 1.3e-63
HMMPfam Glycosyl transferase, family 8 2.9e-70
superfamily Nucleotide-diphospho-sugar transferases 1.9e-66

See the detailed result >

AT3G02350.1

Model type
Protein coding
Short Description
galacturonosyltransferase 9
Curator Summary
Encodes a protein with putative galacturonosyltransferase activity.
Computational Description
galacturonosyltransferase 9 (GAUT9); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT3G25140.1); Has 1426 Blast hits to 1422 proteins in 244 species: Archae - 0; Bacteria - 444; Metazoa - 141; Fungi - 7; Plants - 818; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-70-E12 introduced

  • F07948 - Specific phenotypes were NOT observed.
  • F08148 - Specific phenotypes were NOT observed.
  • F09711 - seed::increased size / seed::increased length
  • F28447 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found