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  3. RAFL09-70-F18

RAFL09-70-F18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06707)

full reading [+] show sequence

Nucleotide sequence: RAFL09-70-F18 - full reading 
AAGTGTCTCA TTCTACAAAT ATATATAACA ACAGCCTTCA ATCTTCCATA 
TCTATCTCTC TCCCTCTGCT CGGCGAGAAT AATCACTTAA TCAGACATCA 
GAAGCAGCAT GATGAAGTTC AAGTTCCAGT ACGAGGAGGA ATACATCAAA 
AACTCGAGAG ACGTTGAGTT GTTCGCTTGC AGATGGCTTC CTTCTTCTTC 
TCCCCGAGCT CTAGTCTTCC TCTGCCATGG TTATGGAATG GAGTGCAGTA 
GCTTCATGAG AGAATGCGGA ATACGGCTGG CATCAGCGGG ATATGCAGTG 
TTTGGGATGG ACTACGAGGG GCATGGTCGG TCCAAGGGTG CTCGTTGCTA 
TATAAAAAAA TTCAGTAATA TAGTAAATGA CTGCTTTGAC TATTACACAT 
CCATCTCTGC ACAAGAAGAA TACAAAGAGA AAGGTAGATT TTTGTATGGA 
GAATCAATGG GAGGTGCAGT TGCTTTGTTG CTTCACAAGA AAGATCCTTC 
TTTTTGGAAC GGGGCTCTTC TCGTTGCTCC CATGTGTAAG GTCACGTTTC 
TTCTCATCTC TATCATCGAA ACCCTATATT TAATCAAGTT AAGACACAAA 
ATCTATTAGT TTTAGACACA ACTTAATTAT CAACATTTTC ATTAGTTTTG 
TGTGTGTGGG CAGATATCAG AGAAGGTGAA ACCACACCCA GTAGTCATAA 
ATCTACTAAC GAGAGTTGAA GATATTATAC CAAAATGGAA GATAGTTCCT 
ACAAAAGATG TTATCGATGC TGCCTTCAAG GATCCGGTCA AGCGCGAAGA 
GATAAGGAAC AACAAGCTGA TATATCAAGA CAAGCCAAGA CTTAAAACCG 
CACTTGAAAT GCTTAGAACG AGCATGGACC TTGAAGACAC TCTCCACGAG 
ATCACATTGC CTTTCTTTGT CCTTCACGGT GAAGCAGACA TTGTGACTGA 
TCCAGAGATA AGCAAAGCCT TGTTCGAGAA GGCAAGCACA CGCGACAAAA 
CCATTAAACT TTACCCAGGA ATGTGGCATG GATTAACTTC TGGTGAGCCT 
GATGCTAACG TTGACCTCGT TTTTGCTGAC ATTGTCAATT GGCTTGATGC 
TCGTACCGGC GACTCCGCTT CTCTGACAGT CACTCCCGTA CATGATTTTA 
CCTCCAATGT TCAAAAGGTC GTTGACGGTG TTAGTAACGG TCAAGGAAAA 
TCTAAACGAC CACAAGCTAG TCTCCTTTGT GGTTTAAATG GTGGTGGACG 
TCGTTTGGTC CATAGATCTT CTATGTAATG ATAAACTAAA CAGAGAAGAA 
TCTGTTTTAT TTTGTACTTC AGATTCGTTT TCCTAAATC

Gene models with high sequence identity

  1. AT3G62860.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 6e-11
Gene3D no description 2e-06
superfamily alpha/beta-Hydrolases 7.2e-22
superfamily alpha/beta-Hydrolases 2.2e-15
HMMPanther LYSOPHOSPHOLIPASE 4.5e-73
HMMPanther PHOSPHOLIPASE-RELATED 4.5e-73
HMMPanther LYSOPHOSPHOLIPASE 3.8e-122
HMMPanther PHOSPHOLIPASE-RELATED 3.8e-122
HMMPfam Hydrolase_4 2.1e-21

See the detailed result >

AT3G62860.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G47630.1); Has 2895 Blast hits to 2893 proteins in 1018 species: Archae - 30; Bacteria - 1827; Metazoa - 110; Fungi - 120; Plants - 454; Viruses - 49; Other Eukaryotes - 305 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-70-F18 introduced

  • F05210 - seed::increased size
  • F05219 - Specific phenotypes were NOT observed.
  • F06840 - Specific phenotypes were NOT observed.
  • F10711 - Specific phenotypes were NOT observed.
  • F11649 - rosette leaf::abnormal / cauline leaf::dark green / stem::abnormal
  • F21528 - Specific phenotypes were NOT observed.
  • F21940 - Specific phenotypes were NOT observed.
  • F24418 - Specific phenotypes were NOT observed.
  • F28520 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

11 mutant lines found