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  3. RAFL09-70-H13

RAFL09-70-H13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06713)

full reading [+] show sequence

Nucleotide sequence: RAFL09-70-H13 - full reading 
ATAGTAAACT CAAGTAATCA AGCAAGTAAA CGAAACATAA AAATAAAAGT 
AGTGCAAGAA ACAGAGGAGT TAGATACCAA AAAGTGAGAG ATATCGAATG 
GCGGAGAAAG AAGAGAGTGT GAAGCTTCTA GGGTTTTGGG CAAGCCCTTT 
TAGTCGTCGA GTCGAGATGG CTCTCAAACT CAAAGGCGTG CCATACGAAT 
ACTTGGAAGA AGATTTGCCC AACAAGACCC CTTTGCTTCT GGAGCTAAAC 
CCGCTTCACA AGAAAGTTCC GGTTCTTGTC CACAATGACA AAATATTACT 
CGAGTCACAT CTGATTCTCG AATACATCGA TCAGACGTGG AAGAACAGTC 
CAATTCTTCC TCAAGATCCT TACGAGAAGG CCATGGCTCG ATTTTGGGCC 
AAGTTCATCG ATGACCAGAT CCTAACACTA GGGTTTAGGT CCCTTGTAAA 
AGCAGAGAAA GGAAGAGAGG TTGCTATTGA AGAGACTCGG GAACTGCTTA 
TGTTTCTTGA GAAAGAAGTC ACTGGAAAAG ATTTCTTCGG TGGCAAGACA 
ATCGGATTCT TGGACATGAT CGCAGGAAGT ATGATCCCAT TTTGTCTAGC 
TAGACTTTGG AAAGGTATTG GAATTGATAT GATTCCAGAG GAGAAGTTTC 
CGGAATTAAA TAGATGGATC AAGAATTTGG AAGAAGTTGA GGCAGTGAGG 
GGATGTATTC CTCCAAGAGA GAAACAAATT GAGCGCATGA CCAAAATTGC 
AGAGACAATT AAGTCTGCCT AAATTAAAGA TACTTCTTGC CTACGAAAAT 
ATTTGATTTA TATGCTTGCA TCGTTTTTTA TTTATATTTT TATTTTTTAA 
AGTTTTTCGA AAAATAGAAT GACCTAATAT TTAAGTAAAA AGATCAAAAA 
CCTATTTGAA AGTTACAGCA ATCAAATAAC GTGGTGTGTC TGGAGATTGT 
AAAAGCCAAG ACTAGAAGGA AATAAGAATA AAATAAC

Gene models with high sequence identity

  1. AT2G29490.1 [+] show detail - glutathione S-transferase TAU 1
    E-value: 0; Score: 99.80

 

InterPro Scan Digest

Program Description E-value
Gene3D Thioredoxin fold 6.3e-20
Gene3D Glutathione S-transferase, C-terminal-like 4.7e-39
HMMPfam Glutathione S-transferase, N-terminal 5.3e-12
HMMPfam Glutathione S-transferase, C-terminal 1.8e-05
ProfileScan Glutathione S-transferase, N-terminal 23.273
ProfileScan Glutathione S-transferase/chloride channel, C-terminal 18.669
superfamily Glutathione S-transferase, C-terminal-like 5.5e-36
superfamily Thioredoxin-like fold 3.5e-24
HMMPanther GLUTATHIONE S-TRANSFERASE 3.8e-105
HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 3.8e-105

See the detailed result >

AT2G29490.1

Model type
Protein coding
Short Description
glutathione S-transferase TAU 1
Curator Summary
Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
Computational Description
glutathione S-transferase TAU 1 (GSTU1); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase tau 2 (TAIR:AT2G29480.1); Has 9031 Blast hits to 9013 proteins in 1259 species: Archae - 0; Bacteria - 4823; Metazoa - 1003; Fungi - 192; Plants - 2095; Viruses - 0; Other Eukaryotes - 918 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-70-H13 introduced

  • F12903 - Specific phenotypes were NOT observed.
  • F18804 - Specific phenotypes were NOT observed.
  • F28944 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found