1. Home
  2. Full-length cDNAs
  3. RAFL09-70-L01

RAFL09-70-L01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06726)

full reading [+] show sequence

Nucleotide sequence: RAFL09-70-L01 - full reading 
AATTAGCTCA TTCTTGCCTC CAAACAAATA TTCCTGACAG ACCAGACCAC 
TCGTAAGACA GACCAAACCC TAAACTAAAA GCATCCACGT TCTTTGTTTT 
TGTATTGATG GTCTGATCTC ATATCCATGG AGATGGAGAA TCACCGCCCC 
GGCAGTTTCA CCTACATGGG CCGCAAATTC AGCGATTTAA GTCTCAACGA 
TGACTCCTCT GCTTTCAGCG ATTGTAACAG CGACAGATCC GGCGAATTCC 
CCACTGCTTC CTCCGAGAGC CGTCGTCTCC TCCTCTCTTG CGCCTCTGAG 
AATTCCGATG ATCTCATCAA TCATCTCGTG TCGCATCTTG ATTCCTCCTA 
TTCGATCGAT GAGCAGAAGC AAGCTGCTAT GGAGATCAGG CTCTTATCCA 
AGAACAAACC TGAGAATCGG ATCAAAATCG CCAAGGCCGG TGCGATTAAG 
CCGTTGATTT CTCTGATCTC TTCTTCGGAT CTTCAGCTTC AGGAGTATGG 
TGTCACTGCA ATCTTGAATC TATCTCTCTG CGACGAGAAC AAAGAGTCGA 
TTGCTTCTTC CGGTGCGATT AAGCCGCTTG TCAGGGCTTT GAAAATGGGA 
ACACCGACTG CTAAAGAGAA CGCTGCTTGT GCTCTGCTCC GTCTATCGCA 
GATCGAGGAG AACAAAGTCG CCATCGGGAG ATCCGGAGCG ATTCCTCTGT 
TGGTGAACCT TCTAGAAACA GGCGGATTCA GAGCGAAGAA GGACGCGTCG 
ACGGCTCTGT ACTCGTTGTG CTCAGCTAAA GAGAACAAAA TCAGAGCCGT 
GCAATCGGGA ATTATGAAGC CGCTTGTTGA ATTGATGGCG GATTTCGGAT 
CAAACATGGT GGATAAATCG GCGTTTGTGA TGAGTCTGTT AATGTCGGTG 
CCGGAATCGA AACCGGCGAT TGTGGAGGAA GGAGGAGTTC CGGTGCTGGT 
GGAGATAGTA GAGGTGGGAA CACAGAGACA GAAAGAGATG GCTGTGTCGA 
TATTGCTACA GCTTTGTGAG GAGAGTGTTG TGTATAGAAC AATGGTGGCT 
AGAGAAGGAG CGATACCTCC GCTAGTGGCT CTGTCGCAGG CAGGAACAAG 
TCGAGCTAAG CAAAAGGCTG AGGCGTTGAT TGAGCTTCTA AGGCAACTAA 
GATCCATTAG TAATGGTGGT GCTAGATCAT CGTCCCAACT CTGATGTGAG 
CTTTTCTTAT TTATCTTTTT TTACCACACT CTTTCTTCGT CTTTTACTGT 
TAATGCGAGG GTGTATACAA ACAACCAGAA AAAAAAGGGG GGAAAAGGAA 
ACTGTAAATA GTTTGTGTAG AAAATTAGTG GGCTTGTTGT AATTTATCTT 
GAGTTTGGCT TTTCTTTTCT TTTTGTGATC CATTTCATAA ATTTCGGTTT 
GGTTTTAACA GATTTCTCAT TCC

Gene models with high sequence identity

  1. AT3G01400.1 [+] show detail - ARM repeat superfamily protein
    E-value: 0; Score: 99.93

 

InterPro Scan Digest

Program Description E-value
superfamily Armadillo-type fold 3.3e-57
HMMSmart Armadillo 0.00045
HMMSmart Armadillo 0.0038
HMMSmart Armadillo 1.4
HMMSmart Armadillo 47
HMMSmart Armadillo 18
HMMSmart Armadillo 120
HMMPfam Armadillo 2.4e-07
HMMPfam Armadillo 4.8e-06
HMMPfam Armadillo 1e-05
ProfileScan Armadillo 11.602
ProfileScan Armadillo 8.662
HMMPanther VACUOLAR PROTEIN 8-RELATED 1.9e-16
HMMPanther BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAIN 1.9e-16
Gene3D Armadillo-like helical 3.2e-56

See the detailed result >

AT3G01400.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G58680.1); Has 6122 Blast hits to 3580 proteins in 271 species: Archae - 0; Bacteria - 2; Metazoa - 1843; Fungi - 536; Plants - 3048; Viruses - 0; Other Eukaryotes - 693 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-70-L01 introduced

  • F06734 - Specific phenotypes were NOT observed.
  • F06926 - Specific phenotypes were NOT observed.
  • F07519 - Specific phenotypes were NOT observed.
  • F30006 - rosette leaf::increased size / rosette leaf::abnormal / stem::abnormal

Mutant lines with disrupted or induced

6 mutant lines found