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  3. RAFL09-70-P19

RAFL09-70-P19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06745)

full reading [+] show sequence

Nucleotide sequence: RAFL09-70-P19 - full reading 
ATGAACAAGA CACACAGTGC AAAATGACAA AGAGCCCTTC ATCGATTTCG 
AATCTTCTCT CTGAGTAAAT CAATTTCACA AATTCGAGGT TTTTGGTTTT 
TAGCTTACTA CACTACTCCA AGAAGAAAAT CTCAAGTTAA AGTCATTTCC 
TATCAAATCT CTTTTCATGG CGGCTGCTAT TCTCGTTTCT CCTGTTCGCT 
AAATTGCGTC ATTTTCATTG AAGCTTATTA TAAAAGCGGC GTAGATCTGT 
GATTCTACTC ATTGCATTTC CGCGTTTGTG AGGAGAAAGA GGAGAAGATG 
TTGTGTGCTT GTTCAGGCGA ACAATTCCGG TTCGAGGATC AGCCCGGTTC 
GCCGGAATCC CTAGCTACAA GAGATTTCTC AGCTAGTGGA CTTTCTTCTC 
GAAACGGAGG AGGCGATTGG GATTCCAAAT TGGAAGATAT TCAAGTCGAT 
GAAGCTGAAT CGACTTTAAA GGAAGCTCTC TCACTCAACT ATGAGGAAGC 
TAGGGCTTTG TTGGGGAGAC TTGAATATCA GAGAGGTAAT TTTGATGCAG 
CACTTCAAGT GTTTAAAGGG ATTGACATTA AGGTCTTAAC TCCAAGGATA 
ATCAAAGCCA TTGTTGAGAA AACTCTTCCT TGCAAACCAC GCTCTAAAGC 
TGTTATTGTG CCTCCCACCA CAATGTCAAT GCATTCAGTC AGTTTACTTC 
TTGAAGCAAT CTTACTTAAA GCTAGATCAC TTGAAGAACT TGGCTCTTAC 
AAAGAGGCTG CAGAAGAATG CAAAATAATC CTGGACGTGG TTGAAAATGC 
ACTGCCAAGC GGCATGCCTG ACGGAATCAG CGGATTCGCT AAACTGCAGG 
ATATCTTTCA GAAGGCCCTG GAATTGCTTC CTTTACTATG GAAAAAAGCG 
GGGAATCATC ATGAAACTAT TGCTTCATAT CGCCGTGCTT TATCCAGACC 
ATGGAATTTG GATCCCCAGA GGTTAGCTGT TACGCAGAAA TCCTTAGCTT 
TGGTTTTACT TTACGGGAGT GTTGAGGCAT GTCCAAAAGA CAACATCGAG 
GAAGCAATTG TGTTGCTAAT GTTACTTGTA AAGAAGATGG TGGTTGGGGA 
CATACAGTGG GATCCAGAAC TCATGGATCA TCTCACTTAC GCCCTTTCCA 
TGACTGGACA GTTTGAAGTG TTAGCGAACT ATCTAGAGCA GACTCTTCCG 
GGTGTTTACA CCCGCGGGGA GAGATGGTAC CTTCTCTCCC TTTGTTACAG 
TGCTGCTGGG ATCGATAAAG CGGCCATTAA TCTATTAAAG ATGGCCCTAG 
GCCCATCTGA ATCAAGACAA ATACCACACA TTCCGTTGTT ATTGTTTGGA 
GCAAAGCTGT GCTCTAAAGA TCCAAAACAC TCAAGGGACG GCATAAATTT 
TGCTCATAGG CTGCTCGACT TGGGAAACAG TCAGAGTGAA CATCTTTTGA 
GCCAAGCACA CAAGTTCCTT GGTGTATGCT ATGGAAACGC TGCAAGAAGT 
TCTAAATTAG ACTCTGAACG GGTTTTTCTT CAGAAAAAAT CTCTGTTCTC 
TTTAAATGAA GCAGCAAAGA GGGGTAAGGC TGATCCGGAA CTAGACGTTA 
TATTTAACCT AAGCGTTGAG AATGCAGTTC AAAGAAATGT TCAGGCGGCT 
TTGGATGGTG CGGTTGAGTA TTCTAGTATG GTGGGAGGAG TTTCAACTAA 
AGGATGGAAA CATTTAGCTA TTGTCCTTTC AGCGGAGAAA CGGCTCAAGG 
ATGCTGAATC AATACTGGAC TTCACCATGG AAGAGGCTGG TGACATTGAA 
AAGATAGAGC TTCTGAGGTT AAAAGCTGTG CTTCAGATGG CTCAAGAACA 
ACCTAAAAAG GCAATGAAGA CATGCAGCAG CTTACTGGGA CTAATTCGAG 
CGCAAGAGAA ATCTGAACAA TCCGAGAGTC TGCTACAGAA ATTTGAAACG 
GAAGCTTGGC AAGACCTGGC CTCTGTCTAT GGAAAGCTAG GTTCATGGTC 
AGATGCAGAA ACATGTCTCG AGAAGGCAAG ATCCATGTGC TATTATTCTC 
CCAGAGGCTG GAATGAAACA GGTTTGTGTC TAGAAGCTAA ATCACTTCAT 
GAAGAGGCTT TAATATCCTT CTTCCTTTCG CTCTCGATCG AACCAGATCA 
CGTACCTAGC ATTGTTTCTA TAGCAGAGGT CATGATGAAA TCTGGAGATG 
AATCACTTCC AACCGCTAAA AGTTTTCTGA TGAATGCCTT AAGGTTAGAC 
CCGAGAAATC ATGATGCATG GATGAAGCTA GGGCACGTTG CAAAGAAGCA 
AGGCTTGTCA CAGCAAGCTG CAGAGTTTTA CCAAGCTGCA TATGAACTAG 
AACTATCCGC TCCGGTACAG AGTTTCATTT GACGAATAAT ATGAGTTGAA 
TAGTGCACAA TTCTTTTTCT TTTAAGCCTT TTTTTCTTTA ATATATGATT 
TCGGTACTAC TAAACTTGCT TAAGATAATA ACACTCGAGT ATTATATATT 
CCACATTACC ATTTTTTAT

Gene models with high sequence identity

  1. AT1G27460.1 [+] show detail - no pollen germination related 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther TETRATRICOPEPTIDE REPEAT PROTEIN, TPR 3.3e-15
ProfileScan Tetratricopeptide repeat-containing 19.636
Coil coiled-coil 0
Coil coiled-coil 0
Coil coiled-coil 0
Gene3D Tetratricopeptide-like helical 4.8e-22
superfamily TPR-like 1.2e-33
superfamily Protein prenylyltransferase 1.6e-05
HMMSmart Tetratricopeptide repeat 96
HMMSmart Tetratricopeptide repeat 390
HMMSmart Tetratricopeptide repeat 110
HMMSmart Tetratricopeptide repeat 7
HMMSmart Tetratricopeptide repeat 3.9
HMMSmart Tetratricopeptide repeat 4.7

See the detailed result >

AT1G27460.1

Model type
Protein coding
Short Description
no pollen germination related 1
Curator Summary
encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.
Computational Description
no pollen germination related 1 (NPGR1); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT2G43040.1); Has 2043 Blast hits to 1708 proteins in 322 species: Archae - 185; Bacteria - 626; Metazoa - 573; Fungi - 23; Plants - 162; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-70-P19 introduced

  • F26938 - seed::increased size / seed::increased length
  • F29320 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found