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RAFL09-71-A03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06747)

full reading [+] show sequence

Nucleotide sequence: RAFL09-71-A03 - full reading 
CTGGGTCCTC CGCAATTTGA GAATCGGAGA TATCTCAAGT TTCGCAAAGT 
CTCGTGGATT TGATCTTCGT CTCCTTGATC GATGGATTCA CCTTGAGCAA 
TCGTTGATCG AGCTTCGAAG ATGTCGAATC ACTCCAGAGA TGAGCCTAGT 
ACTGCCCCGA AGACAGATCA ATGGTATGAT CTTGTCCTTG GTTCCTCTGC 
CAAAGATGAC TCCTCCCATA AATTCTGCAC TTTGCGATAT GAATTTAAGC 
CGGCTTCAAT CGATAAGAAC AGGTCAGGAT CAATGCACAA GAAGAAGGAT 
AACAGAGTTT CAGTTGAGTT TCAGAATAAC CAACCAGGTA AACCCAAGGT 
GACATTTGAA GGTAGTAGTG AGGATTACAA AGAAAGCGAT GCGGTGTTGT 
TTTTCGATGG GGAGAAGTTT CGTTTAGAGA GGTTGCATCG GGCTGTTACG 
CAGCTGCGAC ATGTTAGGAC ACCTGGTGAA TCTGCTGCGG CTTCTCAATC 
TGCGGTGCCT GTGGAGCATC GGTTATCTCC TGTTGGTCGT GCTGCTAAAT 
CTCCACAAGT CAATAGAAGT TTGCTTCCTG ATGTGCCTGT TGAGGTGGAA 
AGAATCGAAA TTGGGAAGCC AGAGAACTCA GCTGAACCTG CCAACACTGG 
AAACGTGCCT GCAACCTCAC CAGTCGAGGA CAAGAACGAT GATGGAGATG 
AGCATCAAGA GATCGATCTG GTTGAAATAT TTGGCTCATT TACACCAGAG 
AACGACAATG CAGAGAAAGA GAACGCTGAT GGTGGAGAAT ATGTAGAAAG 
CTTAAATAAA CAGCTTAGCA TGACGGAAGA AGAGATTGCA GATGTAGATG 
ACGATAGCGG CGGTGAAGGA GAAAAAGGTC TTAACGCAGC AGAAGCACTT 
AGAGCACAAG TGAACGCAGA GGTGCAAAAG AGTCAAACCT CAAGCTCAAG 
CAGTAGCAGT GGAAGTAGCA GCGGAAGTGA CAGTGATGGT CGTAGCAAAA 
GCGTAAGCAG CGGAAGTGGC AGCGGCGGCC AAAGCAGTAG TGGAAGCAGT 
AGCCGTGGAA GTGGAGGAAG TGACGATGAA GATGAAGTCA ACTCCGTATA 
ACAACCAGCT CCCAACAACT TTGTCAAACA ATATTTCCAT ATTTGAGACA 
CTTTGTCTGA ATAATTTGGT TGAAGAATCC AAAAGGGTAA AAATTTATGT 
TTTACTACGA AAGTAGTAAA TACAAATGAT ATAAAGATCC AGTTAC

Gene models with high sequence identity

  1. AT1G71080.1 [+] show detail - RNA polymerase II transcription elongation factor
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther gb def: Hypothetical protein F23N20.7 (At1g71 1.1e-258
HMMPanther FAMILY NOT NAMED 1.1e-258
HMMPfam EAF 3.2e-25
Coil coiled-coil 0

See the detailed result >

AT1G71080.1

Model type
Protein coding
Short Description
RNA polymerase II transcription elongation factor
Computational Description
RNA polymerase II transcription elongation factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eaf, ELL-associated factor (InterPro:IPR019194); BEST Arabidopsis thaliana protein match is: RNA polymerase II transcription elongation factor (TAIR:AT5G38050.1); Has 12853 Blast hits to 3725 proteins in 482 species: Archae - 50; Bacteria - 7340; Metazoa - 2093; Fungi - 1002; Plants - 180; Viruses - 45; Other Eukaryotes - 2143 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-71-A03 introduced

  • F05532 - Specific phenotypes were NOT observed.
  • F07301 - seed::increased size
  • F09242 - rosette leaf::dark green / rosette leaf::decreased size / sporophyte vegetative stage::decreased speed / whole plant flowering stage::late
  • F14337 - Specific phenotypes were NOT observed.
  • F18919 - seed::increased size
  • F21539 - Specific phenotypes were NOT observed.
  • F24117 - Specific phenotypes were NOT observed.
  • F27703 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found