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  3. RAFL09-71-B10

RAFL09-71-B10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06748)

full reading [+] show sequence

Nucleotide sequence: RAFL09-71-B10 - full reading 
AAGTTTTAAC GGACGCGAGA AATCACAGAG GAAGCGAAGT CAGTGTAGAG 
ATATCTAATT GCGATGGCTT TTTTGAGTAA ATTCGGGAAC ATATTGAAGC 
AGACCACAAA CAAGCAACTC AATGCTCAGG TTTCTTTATC AAGCCCTTCG 
CTTTTTCAAG CAATAAGGTG TATGTCATCT TCTAAGCTCT TTATTGGAGG 
TATGGCTTAT AGCATGGATG AGGATAGCTT AAGAGAAGCT TTCACCAAAT 
ACGGTGAAGT TGTCGATACT AGAGTTATTT TGGATCGTGA AACTGGTAGG 
TCAAGGGGAT TTGGATTTGT TACATTCACC TCTTCAGAAG CGGCATCTAG 
TGCTATCCAG GCTTTGGATG GCCGGGATCT CCATGGCCGG GTTGTTAAAG 
TAAACTATGC AAATGATAGA ACAAGTGGTG GTGGTTTTGG AGGTGGTGGC 
TATGGAGGCG GTGGTGGTGG TTATGGTGGT AGTGGTGGCT ACGGAGGAGG 
TGCTGGTGGC TACGGAGGAA GTGGTGGCTA TGGAGGCGGT GCTGGTGGCT 
ACGGAGGTAA TTCTGGTGGT GGCTACGGAG GTAATGCTGC TGGTGGATAT 
GGAGGCAGTG GTGCTGGTGG CTATGGAGGC GATGCTACTG GTCACGGAGG 
TGCTGGTGGA GGTTATGGTT CAAGCGGTGG CTTTGGATCT AGCGGCAACA 
CTTATGGGGA GGGTTCAAGT GCAAGCGCAG GTGCTGTTGG TGACTATAAT 
GGAAGTAGTG GTTATGGTAG CGCCAATACT TATGGTAGCA GCAATGGTGG 
ATTCGCTGGA GACAGCCAGT TTGGAGGAAG CCCTGTTGGC AACAGCTCTC 
AGTTCGGTGG TGACAATACC CAGTTTACTG CTGGTGGCCA ATTTGGCGGT 
GAGGATCAAT TTGGAAGCAT GGAGAAAAGT GAAACGAAGA TGGAAGATGG 
ACCAATAGGT GGAGAATTCG AAGATGTTGC CAAAAGAGCT TGAAGGAACT 
AGCAAAAAAT GTTGTCAAGA CTGTCTTTTC ATATTAAATC CTATGATTAG 
TAGTAGCTAG CTATTCTACA TTGCTTCCTG AATTAAACAC TTTATCAAGA 
AACAATCTGC TTTTGCTATC TTTGAAAATA ATTTGTAGCT CAATTT

Gene models with high sequence identity

  1. AT5G61030.1 [+] show detail - glycine-rich RNA-binding protein 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan RNA recognition motif, RNP-1 22.231
HMMPfam RNA recognition motif, RNP-1 1.8e-22
superfamily RNA-binding domain, RBD 2.2e-32
Gene3D Nucleotide-binding, alpha-beta plait 6.7e-31
HMMPanther RNA recognition motif, glycine rich protein 5.2e-45
HMMPanther RNA-BINDING PROTEIN 5.2e-45
HMMSmart RNA recognition motif, RNP-1 4e-29
FPrintScan EGGSHELL 1.2e-08
FPrintScan EGGSHELL 1.2e-08
FPrintScan EGGSHELL 1.2e-08
FPrintScan EGGSHELL 1.2e-08

See the detailed result >

AT5G61030.1

Model type
Protein coding
Short Description
glycine-rich RNA-binding protein 3
Curator Summary
encodes a glycine-rich RNA binding protein. Gene expression is induced by cold.
Computational Description
glycine-rich RNA-binding protein 3 (GR-RBP3); FUNCTIONS IN: RNA binding, copper ion binding, ATP binding; INVOLVED IN: response to cold; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 5 (TAIR:AT1G74230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-71-B10 introduced

  • F26021 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found