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  3. RAFL09-72-H13

RAFL09-72-H13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06793)

full reading [+] show sequence

Nucleotide sequence: RAFL09-72-H13 - full reading 
GTTTGTAGTA TAAATATCCT TCTCTTCGTC CCTCTCATCG CCTGTCTCTC 
CTCTTCCTCT TCCCGTTCCA TTTATCCGCA AACGGAGCTT GTTTTCGGTG 
CACCTGCTTC AGCCACTTCA AACTTGAACT GAGAAGGATG GGAAACGAAT 
CATATGAAGA CGCCATCGAA GCTCTCAAGA AGCTTCTCAT TGAGAAGGAT 
GATCTGAAGG ATGTAGCTGC GGCCAAGGTG AAGAAGATCA CGGCGGAGCT 
TCAGGCAGCC TCGTCATCGG ACAGCAAATC TTTTGATCCC GTCGAACGAA 
TTAAGGAAGG CTTCGTCACC TTCAAGAAGG AGAAATACGA GACCAATCCT 
GCTTTGTATG GTGAGCTCGC CAAAGGTCAA AGCCCAAAGT ACATGGTGTT 
TGCTTGTTCG GACTCACGAG TGTGCCCATC ACACGTACTA GACTTCCATC 
CTGGAGATGC CTTCGTGGTT CGTAATATCG CCAATATGGT TCCTCCTTTT 
GACAAGGTCA AATATGCAGG AGTTGGAGCC GCCATTGAAT ACGCTGTCTT 
GCACCTTAAG GTGGAAAACA TTGTGGTGAT AGGGCACAGT GCATGTGGTG 
GCATCAAGGG GCTTATGTCA TTTCCTCTTG ACGGAAACAA CTCTACTGAC 
TTCATAGAGG ATTGGGTCAA AATCTGTTTA CCAGCAAAGT CAAAAGTTTT 
GGCAGAAAGT GAAAGTTCAG CATTTGAAGA CCAATGTGGC CGATGCGAAA 
GGGAGGCAGT GAATGTGTCA CTAGCAAACC TATTGACATA TCCATTTGTG 
AGAGAAGGAG TTGTGAAAGG AACACTTGCT TTGAAGGGAG GCTACTATGA 
CTTTGTTAAT GGCTCCTTTG AGCTTTGGGA GCTCCAGTTT GGAATTTCCC 
CCGTTCATTC TATATGAACT AACACATCAC CATCACCATC GCTACCACCA 
CCATCACAAA CATCATCATC GTCGTCATCA TCATGATCAG CATCTTCATA 
TATAAATGTT TTACTCTTAT TTAATTGCTA CTTGTAATGG TATACATTTA 
CTTGCGATGA GCTTCTTTTC CTTCATTATC CAGTTATAAA ATAAAT

Gene models with high sequence identity

  1. AT5G14740.1 [+] show detail - carbonic anhydrase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Carbonic anhydrase 9.3e-68
superfamily Carbonic anhydrase 1.1e-66
Coil coiled-coil 0
HMMPanther CARBONIC ANHYDRASE 1.2e-96
HMMPanther Carbonic anhydrase 1.2e-96
PatternScan Carbonic anhydrase, prokaryotic-like, conserved site 0
PatternScan Carbonic anhydrase, prokaryotic-like, conserved site 0
HMMPfam Carbonic anhydrase 1.9e-42

See the detailed result >

AT5G14740.1

Model type
Protein coding
Short Description
carbonic anhydrase 2
Curator Summary
Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.
Computational Description
carbonic anhydrase 2 (CA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: defense response to bacterium, carbon utilization; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase 1 (TAIR:AT3G01500.2); Has 5122 Blast hits to 5105 proteins in 1527 species: Archae - 36; Bacteria - 3955; Metazoa - 59; Fungi - 207; Plants - 361; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-72-H13 introduced

  • F01401 - Specific phenotypes were NOT observed.
  • F09027 - Specific phenotypes were NOT observed.
  • F20921 - Specific phenotypes were NOT observed.
  • F21521 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found